Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   BS636_RS14945 Genome accession   NZ_CP024011
Coordinates   3075308..3076012 (-) Length   234 a.a.
NCBI ID   WP_099339496.1    Uniprot ID   A0A2D1IT91
Organism   Acinetobacter sp. LoGeW2-3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3070308..3081012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS636_RS14935 (BS636_14930) clpB 3071247..3073826 (-) 2580 WP_099339494.1 ATP-dependent chaperone ClpB -
  BS636_RS14940 (BS636_14935) - 3074078..3075127 (-) 1050 WP_099339495.1 NADP(H)-dependent aldo-keto reductase -
  BS636_RS14945 (BS636_14940) crp 3075308..3076012 (-) 705 WP_099339496.1 cAMP-activated global transcriptional regulator CRP Regulator
  BS636_RS14950 (BS636_14945) - 3076161..3076583 (+) 423 WP_099339497.1 OsmC family protein -
  BS636_RS14955 (BS636_14950) - 3076662..3077702 (-) 1041 WP_099339498.1 metallophosphoesterase -
  BS636_RS14960 (BS636_14955) - 3078008..3080245 (-) 2238 WP_099339499.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26324.98 Da        Isoelectric Point: 4.6729

>NTDB_id=251158 BS636_RS14945 WP_099339496.1 3075308..3076012(-) (crp) [Acinetobacter sp. LoGeW2-3]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNEVPAEDESEE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=251158 BS636_RS14945 WP_099339496.1 3075308..3076012(-) (crp) [Acinetobacter sp. LoGeW2-3]
ATGACTTCAAACTTTTCACAATTAAGCACAGATGCACTTTCTCCGGGGCAATTACCAGAATCCGTGAAGGCATTATTAAA
ACGTGCATATATCAACCGTTACCCAAAACGTACAACGATCGTTGATGCAGGAACAGAATCTAAATCTTTATATTTGATTC
TGAAGGGGTCTGTATCGATCATTCTTCGTGAAGATGATGAGCGTGAAATTGTCGTAGCATATTTGAATGCGGGTGACTTT
TTTGGGGAAATGGGTTTATTCGAAGCAAATCCACAACGTACTGCAGAAGTGCGTACGCGTGACGTTTGTGAAATTGCGGA
AATTACCTACGAAAACTTCCATGAACTCAGCAAGCAATATCCTGACTTAAGTTATGCGGTATTTGCCCAGCTGGTTCGAC
GTCTGAAGAACACCACGCGTAAAGTAACTGACCTGGCATTTATCGATGTTTCTGGTCGTATTGCACGTTGTCTGATTGAT
CTTTCAGCTCAGCCTGAAGCGATGATTCTGCCAAATGGCCGTCAGATCCGTATTACTCGTCAGGAAATTGGCCGTATCGT
GGGCTGTTCCCGTGAAATGGTGGGGCGTGTGCTGAAAACGCTGGAAGAGCAAGGCATGATCGAAACGGATGGTAAAGCAA
TTCTGATCTTTGATGCTTCATTAGAACAAAATGAAGTGCCAGCTGAAGATGAATCTGAAGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1IT91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

92.735

100

0.927
  crp Vibrio cholerae strain A1552

47.317

87.607

0.415
  crp Haemophilus influenzae Rd KW20

48.205

83.333

0.402

Multiple sequence alignment