Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CRN29_RS07225 Genome accession   NZ_CP023966
Coordinates   1483489..1484361 (-) Length   290 a.a.
NCBI ID   WP_023350397.1    Uniprot ID   -
Organism   Staphylococcus capitis strain FDAARGOS_378     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1438194..1501710 1483489..1484361 within 0


Gene organization within MGE regions


Location: 1438194..1501710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN29_RS07045 (CRN29_07045) recA 1439755..1440807 (-) 1053 WP_098905490.1 recombinase RecA Machinery gene
  CRN29_RS07050 (CRN29_07050) - 1440976..1442124 (-) 1149 WP_023350376.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  CRN29_RS07055 (CRN29_07055) pgsA 1442267..1442848 (-) 582 WP_023350377.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CRN29_RS07060 (CRN29_07060) - 1442876..1443268 (-) 393 WP_002436354.1 RodZ family helix-turn-helix domain-containing protein -
  CRN29_RS07065 (CRN29_07065) - 1443287..1444114 (-) 828 WP_002436330.1 YmfK family protein -
  CRN29_RS07070 (CRN29_07070) ymfI 1444273..1444980 (-) 708 WP_023350378.1 elongation factor P 5-aminopentanone reductase -
  CRN29_RS07075 (CRN29_07075) yfmH 1444980..1446266 (-) 1287 WP_023350379.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  CRN29_RS07080 (CRN29_07080) yfmF 1446266..1447540 (-) 1275 WP_023350380.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  CRN29_RS07085 (CRN29_07085) - 1447582..1448292 (-) 711 WP_023350381.1 GntR family transcriptional regulator -
  CRN29_RS12445 - 1448295..1449755 (-) 1461 Protein_1367 DNA translocase FtsK -
  CRN29_RS12450 - 1449860..1450715 (-) 856 Protein_1368 DNA translocase FtsK 4TM domain-containing protein -
  CRN29_RS07095 (CRN29_07095) rnjB 1450973..1452646 (-) 1674 WP_002469869.1 ribonuclease J2 -
  CRN29_RS07100 (CRN29_07100) pnp 1452880..1454979 (-) 2100 WP_023350384.1 polyribonucleotide nucleotidyltransferase -
  CRN29_RS07105 (CRN29_07105) rpsO 1455113..1455382 (-) 270 WP_002436359.1 30S ribosomal protein S15 -
  CRN29_RS07110 (CRN29_07110) ribF 1455504..1456475 (-) 972 WP_002436322.1 riboflavin biosynthesis protein RibF -
  CRN29_RS07115 (CRN29_07115) truB 1456491..1457408 (-) 918 WP_023350385.1 tRNA pseudouridine(55) synthase TruB -
  CRN29_RS07120 (CRN29_07120) rbfA 1457557..1457907 (-) 351 WP_002436301.1 30S ribosome-binding factor RbfA -
  CRN29_RS07125 (CRN29_07125) infB 1458064..1460238 (-) 2175 WP_023350386.1 translation initiation factor IF-2 -
  CRN29_RS07130 (CRN29_07130) - 1460243..1460560 (-) 318 WP_002436350.1 ribosomal L7Ae/L30e/S12e/Gadd45 family protein -
  CRN29_RS07135 (CRN29_07135) rnpM 1460557..1460841 (-) 285 WP_002436310.1 RNase P modulator RnpM -
  CRN29_RS07140 (CRN29_07140) nusA 1460858..1462081 (-) 1224 WP_002436342.1 transcription termination factor NusA -
  CRN29_RS07145 (CRN29_07145) rimP 1462102..1462569 (-) 468 WP_002436317.1 ribosome maturation factor RimP -
  CRN29_RS07150 (CRN29_07150) - 1462794..1467104 (-) 4311 WP_087671603.1 PolC-type DNA polymerase III -
  CRN29_RS07155 (CRN29_07155) - 1467360..1469063 (-) 1704 WP_049326556.1 proline--tRNA ligase -
  CRN29_RS07160 (CRN29_07160) rseP 1469083..1470369 (-) 1287 WP_023350389.1 RIP metalloprotease RseP -
  CRN29_RS07165 (CRN29_07165) - 1470609..1471391 (-) 783 WP_002436308.1 phosphatidate cytidylyltransferase -
  CRN29_RS07170 (CRN29_07170) - 1471395..1472165 (-) 771 WP_023350390.1 isoprenyl transferase -
  CRN29_RS07175 (CRN29_07175) frr 1472446..1473000 (-) 555 WP_002436295.1 ribosome recycling factor -
  CRN29_RS07180 (CRN29_07180) pyrH 1473017..1473739 (-) 723 WP_002436299.1 UMP kinase -
  CRN29_RS07185 (CRN29_07185) tsf 1473876..1474754 (-) 879 WP_030064793.1 translation elongation factor Ts -
  CRN29_RS07190 (CRN29_07190) rpsB 1474905..1475693 (-) 789 WP_002436327.1 30S ribosomal protein S2 -
  CRN29_RS07195 (CRN29_07195) codY 1475947..1476720 (-) 774 WP_002436324.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  CRN29_RS07200 (CRN29_07200) hslU 1476743..1478146 (-) 1404 WP_023350392.1 ATP-dependent protease ATPase subunit HslU -
  CRN29_RS07205 (CRN29_07205) hslV 1478230..1478772 (-) 543 WP_023350393.1 ATP-dependent protease subunit HslV -
  CRN29_RS07210 (CRN29_07210) xerC 1478776..1479666 (-) 891 WP_023350394.1 tyrosine recombinase XerC -
  CRN29_RS07215 (CRN29_07215) trmFO 1479903..1481210 (-) 1308 WP_023350395.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CRN29_RS07220 (CRN29_07220) topA 1481236..1483311 (-) 2076 WP_030064789.1 type I DNA topoisomerase -
  CRN29_RS07225 (CRN29_07225) dprA 1483489..1484361 (-) 873 WP_023350397.1 DNA-processing protein DprA Machinery gene
  CRN29_RS07230 (CRN29_07230) sucD 1484587..1485495 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  CRN29_RS07235 (CRN29_07235) sucC 1485517..1486683 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  CRN29_RS07240 (CRN29_07240) - 1486791..1487561 (-) 771 WP_023350398.1 ribonuclease HII -
  CRN29_RS07245 (CRN29_07245) ylqF 1487545..1488428 (-) 884 Protein_1399 ribosome biogenesis GTPase YlqF -
  CRN29_RS07250 (CRN29_07250) - 1488708..1491308 (+) 2601 WP_023350400.1 YfhO family protein -
  CRN29_RS07255 (CRN29_07255) - 1491301..1493907 (+) 2607 WP_023350401.1 YfhO family protein -
  CRN29_RS07260 (CRN29_07260) - 1494387..1494593 (+) 207 WP_226859621.1 hypothetical protein -
  CRN29_RS07265 (CRN29_07265) - 1494633..1494971 (+) 339 WP_023350404.1 hypothetical protein -
  CRN29_RS07270 (CRN29_07270) rplS 1495548..1495898 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  CRN29_RS07275 (CRN29_07275) trmD 1496004..1496741 (-) 738 WP_023350405.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  CRN29_RS07280 (CRN29_07280) rimM 1496741..1497244 (-) 504 WP_023350406.1 ribosome maturation factor RimM -
  CRN29_RS07285 (CRN29_07285) rpsP 1497507..1497782 (-) 276 WP_002453071.1 30S ribosomal protein S16 -
  CRN29_RS07290 (CRN29_07290) ffh 1498210..1499577 (-) 1368 WP_002435148.1 signal recognition particle protein -
  CRN29_RS07295 (CRN29_07295) - 1499607..1499939 (-) 333 WP_002435170.1 putative DNA-binding protein -
  CRN29_RS07300 (CRN29_07300) ftsY 1499926..1501185 (-) 1260 WP_023350407.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33411.79 Da        Isoelectric Point: 9.7513

>NTDB_id=250970 CRN29_RS07225 WP_023350397.1 1483489..1484361(-) (dprA) [Staphylococcus capitis strain FDAARGOS_378]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNKMIEDWAKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIGSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNKLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYPPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDECSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=250970 CRN29_RS07225 WP_023350397.1 1483489..1484361(-) (dprA) [Staphylococcus capitis strain FDAARGOS_378]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAACGCACTAATTCAAAATAAGATGATTGAGGATTGGGCTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGATAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGGCTCAAGAAAGTCAACCTTATATACAACTCAAGCTTTGGAAT
ATCTTTTCCCATCATTTAAATCACTAAAAATGACGATTATTTCAGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTCGCACTAAAAAATAAACTTCCAACAATAGGCGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCTTTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCCACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAATGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

59.028

99.31

0.586
  dprA Staphylococcus aureus MW2

59.028

99.31

0.586

Multiple sequence alignment