Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CRH04_RS11850 Genome accession   NZ_CP023861
Coordinates   2388727..2389209 (-) Length   160 a.a.
NCBI ID   WP_003722552.1    Uniprot ID   A0A3T2EU60
Organism   Listeria monocytogenes EGD-e     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2383727..2394209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH04_RS11810 (CRH04_12015) - 2383999..2385330 (-) 1332 WP_010989956.1 PBSX family phage terminase large subunit -
  CRH04_RS11815 (CRH04_12020) - 2385299..2386093 (-) 795 WP_010989957.1 terminase small subunit -
  CRH04_RS11820 (CRH04_12025) - 2386139..2386678 (-) 540 WP_003734122.1 hypothetical protein -
  CRH04_RS11825 (CRH04_12030) - 2387044..2387478 (-) 435 WP_003735131.1 ArpU family phage packaging/lysis transcriptional regulator -
  CRH04_RS11830 (CRH04_12035) - 2387497..2387661 (-) 165 WP_003727776.1 hypothetical protein -
  CRH04_RS14865 - 2387672..2387797 (-) 126 WP_009924216.1 hypothetical protein -
  CRH04_RS11835 (CRH04_12040) - 2387790..2388173 (-) 384 WP_009924217.1 DUF2481 family protein -
  CRH04_RS11840 (CRH04_12045) - 2388177..2388581 (-) 405 WP_010989958.1 DUF1064 domain-containing protein -
  CRH04_RS11845 (CRH04_12050) - 2388526..2388708 (-) 183 WP_009924219.1 hypothetical protein -
  CRH04_RS11850 (CRH04_12055) ssbA 2388727..2389209 (-) 483 WP_003722552.1 single-stranded DNA-binding protein Machinery gene
  CRH04_RS11855 (CRH04_12060) - 2389206..2389385 (-) 180 WP_003733878.1 hypothetical protein -
  CRH04_RS11860 (CRH04_12065) - 2389489..2389656 (-) 168 WP_003722554.1 hypothetical protein -
  CRH04_RS11865 (CRH04_12070) - 2389653..2390114 (-) 462 WP_003722555.1 hypothetical protein -
  CRH04_RS11870 (CRH04_12075) - 2390111..2390581 (-) 471 WP_003722556.1 pentapeptide repeat-containing protein -
  CRH04_RS11875 (CRH04_12080) - 2390578..2391021 (-) 444 WP_003722557.1 YopX family protein -
  CRH04_RS11880 (CRH04_12085) - 2391018..2391215 (-) 198 WP_003722558.1 hypothetical protein -
  CRH04_RS11885 (CRH04_12090) - 2391218..2391814 (-) 597 WP_003734130.1 DUF1642 domain-containing protein -
  CRH04_RS11890 (CRH04_12095) - 2391811..2392623 (-) 813 WP_003722560.1 DNA adenine methylase -
  CRH04_RS11895 (CRH04_12100) - 2392620..2393594 (-) 975 WP_010989959.1 phage replisome organizer N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17837.65 Da        Isoelectric Point: 4.9909

>NTDB_id=250637 CRH04_RS11850 WP_003722552.1 2388727..2389209(-) (ssbA) [Listeria monocytogenes EGD-e]
MMNRVVLVGRLTKDPDLRYTPAGVAVATFTLAVNRTFTNQNGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNNVEGATSNNYQNKANYSNNNQTSSYRADTSQKSDSFASEGKPIDINEDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=250637 CRH04_RS11850 WP_003722552.1 2388727..2389209(-) (ssbA) [Listeria monocytogenes EGD-e]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACAAAAGATCCGGATTTACGTTACACTCCAGCAGGCGTAGCAGTCGC
GACTTTTACATTAGCAGTAAATCGTACATTCACTAATCAAAACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTT
GGCGCAAACCAGCAGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
TAACAACGTAGAAGGTGCTACATCGAATAATTACCAAAACAAGGCTAATTATTCAAATAACAATCAAACAAGCTCATATC
GAGCGGATACGAGTCAGAAGAGCGATTCATTTGCAAGTGAAGGTAAGCCGATTGATATTAATGAAGATGATTTGCCATTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T2EU60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.116

100

0.7
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

66.25

0.419

Multiple sequence alignment