Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   BAALB65_RS14430 Genome accession   NZ_CP029069
Coordinates   2913288..2914292 (-) Length   334 a.a.
NCBI ID   WP_003152385.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB65     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2908288..2919292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAALB65_RS14405 (BAALB65_14405) - 2909251..2909883 (+) 633 WP_014418651.1 GNAT family N-acetyltransferase -
  BAALB65_RS14410 (BAALB65_14410) - 2909908..2910552 (+) 645 WP_014418652.1 acetoin utilization AcuB family protein -
  BAALB65_RS14415 (BAALB65_14415) - 2910549..2911715 (+) 1167 WP_109567132.1 acetoin utilization protein AcuC -
  BAALB65_RS14420 (BAALB65_14420) motS 2911725..2912414 (-) 690 WP_003152387.1 flagellar motor protein MotS -
  BAALB65_RS14425 (BAALB65_14425) motP 2912404..2913219 (-) 816 WP_007408775.1 flagellar motor protein MotP -
  BAALB65_RS14430 (BAALB65_14430) ccpA 2913288..2914292 (-) 1005 WP_003152385.1 catabolite control protein A Regulator
  BAALB65_RS14435 (BAALB65_14435) - 2914571..2915647 (-) 1077 WP_003152383.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  BAALB65_RS14440 (BAALB65_14440) ytxJ 2915883..2916209 (-) 327 WP_014418654.1 bacillithiol system redox-active protein YtxJ -
  BAALB65_RS14445 (BAALB65_14445) - 2916235..2916648 (-) 414 WP_003152380.1 YtxH domain-containing protein -
  BAALB65_RS14450 (BAALB65_14450) - 2916681..2917103 (-) 423 WP_007408777.1 DUF948 domain-containing protein -
  BAALB65_RS14455 (BAALB65_14455) murC 2917259..2918557 (-) 1299 WP_032873626.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36963.29 Da        Isoelectric Point: 4.9206

>NTDB_id=250133 BAALB65_RS14430 WP_003152385.1 2913288..2914292(-) (ccpA) [Bacillus amyloliquefaciens strain ALB65]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNLEKELHLLNTMLGKQVDGIVFMGGNITDEHVEEFKRSPVPIVLAASVEEQGETPSVAI
DYEQAIYDAVKLFIDKGHRDIAFVSGPMQEPINRSKKLQGYKRALEEAAIPFNEQFVAEGDYTYDSGMEALQSLMGLDRK
PTAILSATDEMALGIIHAAQDQGLSIPDDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRQSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=250133 BAALB65_RS14430 WP_003152385.1 2913288..2914292(-) (ccpA) [Bacillus amyloliquefaciens strain ALB65]
GTGAGCAACATTACGATATACGATGTGGCCAGAGAAGCAAATGTCAGTATGGCGACTGTTTCCCGCGTCGTGAACGGCAA
CCCGAATGTAAAACCGACGACCAGAAAAAAAGTATTGGAAGCCATTGACCGGCTCGGCTACCGCCCGAACGCGGTGGCAA
GAGGGCTTGCAAGCAAAAAAACGACAACGGTCGGCGTCATCATCCCTGATATCTCAAGCATTTTCTACTCTGAACTTGCG
CGTGGAATTGAAGATATCGCGACGATGTACAAATATAATATTATTTTAAGCAACTCGGACCAAAATCTTGAGAAAGAACT
GCATCTGTTAAATACGATGCTTGGCAAACAAGTGGACGGTATCGTATTTATGGGCGGCAACATTACGGACGAGCATGTCG
AAGAATTTAAGCGCTCTCCTGTGCCGATCGTCTTGGCGGCATCAGTGGAAGAACAGGGCGAGACGCCTTCTGTCGCCATT
GATTATGAACAGGCGATTTATGATGCCGTTAAGCTTTTTATTGATAAAGGGCATCGCGATATTGCATTCGTCTCCGGACC
GATGCAAGAGCCGATCAACCGTTCGAAAAAACTGCAAGGGTACAAACGGGCGCTTGAAGAAGCGGCGATTCCGTTTAACG
AGCAATTCGTAGCGGAAGGCGATTACACCTATGATTCCGGTATGGAGGCGCTTCAAAGCTTGATGGGCCTTGACCGGAAA
CCGACGGCGATTCTTTCTGCGACGGATGAAATGGCCCTCGGCATTATCCATGCGGCCCAAGATCAAGGTCTTTCGATACC
TGATGATCTTGATATTATCGGTTTTGACAATACGAGATTGAGCCTGATGGTCCGCCCTCAGCTTTCAACAGTCGTGCAGC
CTACGTACGATATCGGCGCCGTGGCGATGAGACTTTTGACAAAACTGATGAACAAAGAGCCGGTTGAAGAGCATATCGTC
GAATTGCCTCACCGCATCGAATTAAGACAATCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.242

98.802

0.536

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.333

98.802

0.527

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503