Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PFL01_RS09105 Genome accession   NC_007492
Coordinates   2021222..2021824 (+) Length   200 a.a.
NCBI ID   WP_007951652.1    Uniprot ID   Q3KFA5
Organism   Pseudomonas fluorescens Pf0-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2016222..2026824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFL01_RS09085 (Pfl01_1804) - 2016581..2017330 (-) 750 WP_011333275.1 substrate-binding periplasmic protein -
  PFL01_RS09090 (Pfl01_1805) dnaX 2017476..2019566 (+) 2091 WP_011333276.1 DNA polymerase III subunit gamma/tau -
  PFL01_RS09095 (Pfl01_1806) - 2019634..2019972 (+) 339 WP_007951650.1 YbaB/EbfC family nucleoid-associated protein -
  PFL01_RS09100 (Pfl01_1807) - 2020121..2021155 (+) 1035 WP_011333277.1 NADP-dependent oxidoreductase -
  PFL01_RS09105 (Pfl01_1808) recR 2021222..2021824 (+) 603 WP_007951652.1 recombination mediator RecR Machinery gene
  PFL01_RS09110 (Pfl01_1809) - 2021896..2023044 (+) 1149 WP_011333278.1 acyl-CoA dehydrogenase family protein -
  PFL01_RS09115 (Pfl01_1810) - 2023103..2023651 (-) 549 WP_003223345.1 adenine phosphoribosyltransferase -
  PFL01_RS09120 (Pfl01_1811) fnr 2023730..2024464 (-) 735 WP_007951654.1 fumarate/nitrate reduction transcriptional regulator Fnr -
  PFL01_RS09125 (Pfl01_1812) - 2024620..2025102 (+) 483 WP_011333279.1 hypothetical protein -
  PFL01_RS09130 (Pfl01_1813) hemN 2025099..2026481 (-) 1383 WP_011333280.1 oxygen-independent coproporphyrinogen III oxidase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21517.72 Da        Isoelectric Point: 5.9987

>NTDB_id=24977 PFL01_RS09105 WP_007951652.1 2021222..2021824(+) (recR) [Pseudomonas fluorescens Pf0-1]
MSFSPLIRQLIDALRTLPGVGQKTAQRMALQLLERDRSGGTRLAQALSQAMEGVGHCRQCRTLTEDDLCPQCADTRRDDT
LLCVVEGPMDVYAVEQTGFRGRYFVLKGHLSPLDGLGPEAIGIPQLMARIEEAGTFTEVILATNPTVEGEATAHYIAQLL
QNKGLIASRIAHGVPLGGELELVDGGTLAHSFAGRKPISL

Nucleotide


Download         Length: 603 bp        

>NTDB_id=24977 PFL01_RS09105 WP_007951652.1 2021222..2021824(+) (recR) [Pseudomonas fluorescens Pf0-1]
ATGAGCTTCAGCCCTTTGATTCGCCAACTGATCGACGCCCTGCGAACTTTGCCGGGCGTGGGTCAGAAAACTGCCCAGCG
TATGGCGTTGCAGTTGCTCGAACGTGACCGCAGCGGCGGTACGCGCCTGGCCCAGGCCTTGAGCCAAGCCATGGAAGGGG
TCGGACACTGCCGCCAGTGCCGCACGTTGACCGAAGACGATCTGTGCCCGCAATGCGCCGACACCCGTCGCGACGACACG
CTACTGTGCGTGGTGGAAGGGCCGATGGACGTCTACGCGGTCGAGCAGACCGGCTTCCGTGGTCGCTACTTCGTGCTCAA
GGGGCACCTATCGCCGCTGGACGGCCTGGGCCCGGAAGCCATCGGCATTCCGCAATTGATGGCGCGGATCGAAGAGGCGG
GCACCTTCACCGAAGTCATCCTCGCCACCAACCCGACCGTGGAGGGTGAAGCAACCGCCCACTACATCGCCCAGTTGCTG
CAGAACAAAGGCCTGATCGCCTCGCGCATCGCCCACGGCGTGCCGTTGGGCGGCGAACTGGAGCTGGTGGACGGCGGCAC
GCTGGCTCACTCGTTTGCCGGGCGCAAGCCGATTTCCCTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(82-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3KFA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46

100

0.46
  recR Bacillus subtilis subsp. subtilis str. 168

46.193

98.5

0.455
  recR Streptococcus pneumoniae R6

36.735

98

0.36

Multiple sequence alignment