Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   CQJ38_RS17010 Genome accession   NZ_CP023748
Coordinates   3403636..3404799 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain LABIM40     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3398636..3409799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS16980 (CQJ38_16980) - 3398900..3399319 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  CQJ38_RS16985 (CQJ38_16985) comFC 3399393..3400082 (-) 690 WP_198404715.1 phosphoribosyltransferase family protein Machinery gene
  CQJ38_RS16990 (CQJ38_16990) - 3400088..3400372 (-) 285 WP_098081807.1 late competence development ComFB family protein -
  CQJ38_RS16995 (CQJ38_16995) comFA 3400430..3401815 (-) 1386 WP_098081808.1 DEAD/DEAH box helicase Machinery gene
  CQJ38_RS17000 (CQJ38_17000) - 3401924..3402772 (-) 849 WP_063094272.1 DegV family protein -
  CQJ38_RS17005 (CQJ38_17005) degU 3402870..3403559 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CQJ38_RS17010 (CQJ38_17010) degS 3403636..3404799 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  CQJ38_RS17015 (CQJ38_17015) - 3405022..3405669 (+) 648 WP_007614107.1 YigZ family protein -
  CQJ38_RS17020 (CQJ38_17020) - 3405674..3406894 (+) 1221 WP_012118574.1 LCP family protein -
  CQJ38_RS17025 (CQJ38_17025) - 3406993..3408069 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  CQJ38_RS17030 (CQJ38_17030) tuaH 3408202..3409398 (-) 1197 WP_098081809.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=249719 CQJ38_RS17010 WP_007407484.1 3403636..3404799(-) (degS) [Bacillus velezensis strain LABIM40]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=249719 CQJ38_RS17010 WP_007407484.1 3403636..3404799(-) (degS) [Bacillus velezensis strain LABIM40]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment