Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CQJ38_RS16985 Genome accession   NZ_CP023748
Coordinates   3399393..3400082 (-) Length   229 a.a.
NCBI ID   WP_198404715.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM40     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3394393..3405082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS16950 (CQJ38_16950) fliW 3394483..3394914 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  CQJ38_RS16955 (CQJ38_16955) - 3394944..3395513 (-) 570 WP_098081805.1 DUF6470 family protein -
  CQJ38_RS16960 (CQJ38_16960) flgL 3395605..3396522 (-) 918 WP_098081806.1 flagellar hook-associated protein FlgL -
  CQJ38_RS16965 (CQJ38_16965) flgK 3396534..3398051 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  CQJ38_RS16970 (CQJ38_16970) - 3398067..3398549 (-) 483 WP_003151394.1 flagellar protein FlgN -
  CQJ38_RS16975 (CQJ38_16975) flgM 3398564..3398830 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CQJ38_RS16980 (CQJ38_16980) - 3398900..3399319 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  CQJ38_RS16985 (CQJ38_16985) comFC 3399393..3400082 (-) 690 WP_198404715.1 phosphoribosyltransferase family protein Machinery gene
  CQJ38_RS16990 (CQJ38_16990) - 3400088..3400372 (-) 285 WP_098081807.1 late competence development ComFB family protein -
  CQJ38_RS16995 (CQJ38_16995) comFA 3400430..3401815 (-) 1386 WP_098081808.1 DEAD/DEAH box helicase Machinery gene
  CQJ38_RS17000 (CQJ38_17000) - 3401924..3402772 (-) 849 WP_063094272.1 DegV family protein -
  CQJ38_RS17005 (CQJ38_17005) degU 3402870..3403559 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CQJ38_RS17010 (CQJ38_17010) degS 3403636..3404799 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25229.88 Da        Isoelectric Point: 8.2921

>NTDB_id=249716 CQJ38_RS16985 WP_198404715.1 3399393..3400082(-) (comFC) [Bacillus velezensis strain LABIM40]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=249716 CQJ38_RS16985 WP_198404715.1 3399393..3400082(-) (comFC) [Bacillus velezensis strain LABIM40]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAACAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment