Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CQJ38_RS17005 Genome accession   NZ_CP023748
Coordinates   3402870..3403559 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain LABIM40     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3397870..3408559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ38_RS16970 (CQJ38_16970) - 3398067..3398549 (-) 483 WP_003151394.1 flagellar protein FlgN -
  CQJ38_RS16975 (CQJ38_16975) flgM 3398564..3398830 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CQJ38_RS16980 (CQJ38_16980) - 3398900..3399319 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  CQJ38_RS16985 (CQJ38_16985) comFC 3399393..3400082 (-) 690 WP_198404715.1 phosphoribosyltransferase family protein Machinery gene
  CQJ38_RS16990 (CQJ38_16990) - 3400088..3400372 (-) 285 WP_098081807.1 late competence development ComFB family protein -
  CQJ38_RS16995 (CQJ38_16995) comFA 3400430..3401815 (-) 1386 WP_098081808.1 DEAD/DEAH box helicase Machinery gene
  CQJ38_RS17000 (CQJ38_17000) - 3401924..3402772 (-) 849 WP_063094272.1 DegV family protein -
  CQJ38_RS17005 (CQJ38_17005) degU 3402870..3403559 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CQJ38_RS17010 (CQJ38_17010) degS 3403636..3404799 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  CQJ38_RS17015 (CQJ38_17015) - 3405022..3405669 (+) 648 WP_007614107.1 YigZ family protein -
  CQJ38_RS17020 (CQJ38_17020) - 3405674..3406894 (+) 1221 WP_012118574.1 LCP family protein -
  CQJ38_RS17025 (CQJ38_17025) - 3406993..3408069 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=249718 CQJ38_RS17005 WP_003219701.1 3402870..3403559(-) (degU) [Bacillus velezensis strain LABIM40]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=249718 CQJ38_RS17005 WP_003219701.1 3402870..3403559(-) (degU) [Bacillus velezensis strain LABIM40]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment