Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   CPQ91_RS13225 Genome accession   NZ_CP023729
Coordinates   2538044..2538337 (-) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus licheniformis strain ATCC 9789     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2533044..2543337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPQ91_RS13180 (CPQ91_13180) tasA 2533426..2534220 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  CPQ91_RS13185 (CPQ91_13185) sipW 2534294..2534878 (-) 585 WP_003183449.1 signal peptidase I SipW -
  CPQ91_RS13190 (CPQ91_13190) tapA 2534875..2535603 (-) 729 WP_061578399.1 amyloid fiber anchoring/assembly protein TapA -
  CPQ91_RS13195 (CPQ91_13195) - 2535880..2536200 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  CPQ91_RS13200 (CPQ91_13200) - 2536224..2536406 (-) 183 WP_003183456.1 YqzE family protein -
  CPQ91_RS13205 (CPQ91_13205) comGG 2536495..2536860 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  CPQ91_RS13210 (CPQ91_13210) comGF 2536873..2537361 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  CPQ91_RS13215 (CPQ91_13215) comGE 2537270..2537617 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  CPQ91_RS13220 (CPQ91_13220) comGD 2537601..2538038 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  CPQ91_RS13225 (CPQ91_13225) comGC 2538044..2538337 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  CPQ91_RS13230 (CPQ91_13230) comGB 2538351..2539385 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  CPQ91_RS13235 (CPQ91_13235) comGA 2539375..2540439 (-) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  CPQ91_RS13240 (CPQ91_13240) - 2540596..2541435 (-) 840 WP_061578398.1 STAS domain-containing protein -
  CPQ91_RS13250 (CPQ91_13250) - 2541677..2542054 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  CPQ91_RS13255 (CPQ91_13255) - 2542263..2542508 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=249594 CPQ91_RS13225 WP_003183466.1 2538044..2538337(-) (comGC) [Bacillus licheniformis strain ATCC 9789]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=249594 CPQ91_RS13225 WP_003183466.1 2538044..2538337(-) (comGC) [Bacillus licheniformis strain ATCC 9789]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433

Multiple sequence alignment