Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FORC83_RS05240 Genome accession   NZ_CP028933
Coordinates   1004578..1005126 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FORC_083     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 999578..1010126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC83_RS05205 (FORC83_1045) - 999767..1000192 (+) 426 WP_002777060.1 N-acetyltransferase -
  FORC83_RS05210 - 1000256..1000876 (+) 621 Protein_1022 NAD(P)H-dependent oxidoreductase -
  FORC83_RS05215 (FORC83_1048) - 1000876..1001481 (+) 606 WP_002867183.1 NAD(P)H-dependent oxidoreductase -
  FORC83_RS05220 (FORC83_1049) pgsA 1001607..1002143 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FORC83_RS05225 (FORC83_1050) rseP 1002140..1003246 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  FORC83_RS05230 (FORC83_1051) - 1003239..1004105 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  FORC83_RS05235 (FORC83_1052) rpsF 1004192..1004569 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  FORC83_RS05240 (FORC83_1053) ssb 1004578..1005126 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  FORC83_RS05245 (FORC83_1054) rpsR 1005137..1005397 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  FORC83_RS05250 (FORC83_1055) lon 1005457..1007832 (-) 2376 WP_002852988.1 endopeptidase La -
  FORC83_RS05255 (FORC83_1056) - 1007849..1008496 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  FORC83_RS05260 (FORC83_1057) fliW 1008657..1009046 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  FORC83_RS05265 (FORC83_1058) proC 1009046..1009780 (+) 735 WP_032582987.1 pyrroline-5-carboxylate reductase Machinery gene
  FORC83_RS05270 (FORC83_1059) ctsT 1009777..1010079 (+) 303 WP_032582988.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=249396 FORC83_RS05240 WP_002860190.1 1004578..1005126(+) (ssb) [Campylobacter jejuni strain FORC_083]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=249396 FORC83_RS05240 WP_002860190.1 1004578..1005126(+) (ssb) [Campylobacter jejuni strain FORC_083]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCGCAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363