Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CQJ30_RS11990 Genome accession   NZ_CP023704
Coordinates   2429950..2431641 (-) Length   563 a.a.
NCBI ID   WP_108898257.1    Uniprot ID   -
Organism   Caldibacillus thermoamylovorans strain SSBM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2424950..2436641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQJ30_RS11970 (CQJ30_11935) - 2426432..2426671 (+) 240 WP_108898255.1 DUF2627 domain-containing protein -
  CQJ30_RS11975 (CQJ30_11940) - 2426694..2427416 (-) 723 WP_041846302.1 glycerophosphodiester phosphodiesterase -
  CQJ30_RS11980 (CQJ30_11945) spo0A 2427494..2428285 (-) 792 WP_108898256.1 sporulation transcription factor Spo0A -
  CQJ30_RS11985 (CQJ30_11950) spoIVB 2428513..2429790 (-) 1278 WP_108899122.1 SpoIVB peptidase -
  CQJ30_RS11990 (CQJ30_11955) recN 2429950..2431641 (-) 1692 WP_108898257.1 DNA repair protein RecN Machinery gene
  CQJ30_RS11995 (CQJ30_11960) argR 2431695..2432147 (-) 453 WP_108898258.1 transcriptional regulator ArgR -
  CQJ30_RS12000 (CQJ30_11965) - 2432427..2434439 (-) 2013 WP_161522411.1 methyl-accepting chemotaxis protein -
  CQJ30_RS12005 (CQJ30_11970) arcC 2434692..2435633 (-) 942 WP_108898260.1 carbamate kinase -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63426.46 Da        Isoelectric Point: 5.1939

>NTDB_id=249398 CQJ30_RS11990 WP_108898257.1 2429950..2431641(-) (recN) [Caldibacillus thermoamylovorans strain SSBM]
MLAELVIKNFAIIESISISFQKGFTVLTGETGAGKSIIIDAIHLLIGGRGSSDFVRHGEEKAEIEGLFLVEDDHPSIEKL
AVFGIEMEDGMIVLKRDMYASGKSVCRINGKLVTIATLREIGRTLVDIHGQHENQELMDEKNHLTLLDQFGGQAVQKALT
EYQTLYREYEKIKKDIAALTQNEQLMAQRLDLLTFQLEEITNAELTIGEDEELLTEKRKLNNFEKLYHSILTAYEALQGE
QKGLDWVSLALSNIEEAAGIDEAYNDTRQIISNSFYQLEDVVHSLRSQLDEMEFDPNRLNEIETRLNEINQLKRKYGQTI
EMILEYASKIEEEIEMISNKENHIESLNKKLKSVEKDLAVEGKNLTDLRKKTAKKLAHAIHQQLKSLYMEKTVFHVYFLE
QSQKFYPNGMDQVEFYMSTNPGEPPKPLTKIASGGELSRIMLALKTIFSSHQGITSIIFDEVDTGVSGRVAQAIGEKIYQ
ISVGSQVLSITHLPQVAAMSDHHILIKKEVKGNRTKTILSKLTEEGRIGELARMISGAQITTATEQHAKEMLQSAAELKN
TLS

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=249398 CQJ30_RS11990 WP_108898257.1 2429950..2431641(-) (recN) [Caldibacillus thermoamylovorans strain SSBM]
TTGTTGGCAGAACTTGTGATTAAAAATTTTGCAATCATTGAATCGATTTCAATTTCATTTCAAAAAGGTTTCACTGTATT
AACCGGAGAAACCGGTGCAGGGAAATCAATTATCATCGATGCGATCCATCTTTTGATCGGTGGGAGAGGCTCGTCTGATT
TTGTTCGGCACGGGGAAGAAAAAGCGGAGATAGAAGGGTTATTTTTAGTTGAAGATGATCATCCTTCCATTGAAAAATTA
GCCGTTTTTGGAATCGAAATGGAAGATGGTATGATTGTTCTCAAAAGGGACATGTACGCTTCCGGTAAAAGTGTTTGTCG
AATAAACGGAAAACTAGTTACCATTGCAACACTCCGGGAAATCGGCCGCACATTAGTTGACATTCACGGACAACATGAAA
ATCAAGAACTTATGGATGAAAAAAACCATCTGACTTTACTTGATCAATTTGGTGGACAAGCTGTTCAAAAAGCATTAACT
GAATATCAAACGCTTTATCGCGAATATGAAAAAATCAAAAAGGATATTGCTGCCCTTACCCAAAATGAACAACTGATGGC
CCAACGATTAGATTTATTAACATTTCAGCTCGAGGAAATTACCAATGCTGAACTTACCATTGGCGAAGATGAAGAATTAT
TAACGGAAAAAAGGAAACTGAATAATTTTGAAAAACTTTATCATTCCATTCTTACCGCATATGAAGCTTTACAAGGTGAG
CAAAAAGGTTTGGATTGGGTCAGTTTAGCTCTTTCCAATATTGAAGAAGCAGCCGGCATTGATGAAGCCTACAATGATAC
TCGACAAATTATATCCAACAGTTTTTATCAGTTAGAGGATGTGGTTCATTCACTCCGATCACAATTAGATGAAATGGAAT
TTGATCCAAACCGGTTGAATGAAATAGAGACTCGTTTAAATGAAATTAACCAATTGAAGAGAAAATACGGTCAAACAATT
GAAATGATTCTTGAATATGCTTCAAAAATTGAAGAAGAAATTGAAATGATTTCCAATAAAGAAAATCATATTGAATCGTT
GAATAAAAAACTAAAGTCTGTGGAAAAAGATTTAGCAGTAGAAGGAAAAAATTTAACGGATTTACGGAAAAAAACTGCCA
AAAAACTTGCCCATGCTATTCATCAACAATTAAAAAGTCTTTATATGGAAAAAACGGTTTTTCATGTATACTTCTTAGAA
CAGTCCCAAAAGTTTTATCCGAACGGAATGGACCAGGTTGAATTTTATATGAGTACAAACCCGGGTGAACCGCCGAAACC
GTTGACAAAAATTGCTTCGGGTGGTGAATTGTCCCGAATCATGCTGGCATTAAAAACCATCTTTTCTTCACATCAAGGAA
TTACTTCGATCATTTTTGATGAAGTGGATACAGGTGTAAGCGGTCGTGTTGCCCAAGCAATCGGCGAAAAGATTTACCAA
ATATCAGTTGGTTCTCAAGTGCTATCCATTACCCATTTACCGCAAGTTGCGGCGATGTCCGATCATCATATCTTAATTAA
AAAAGAAGTAAAGGGCAATCGGACAAAAACCATCCTGTCCAAGTTAACTGAAGAGGGACGGATCGGTGAACTGGCCCGGA
TGATTTCGGGTGCACAAATTACGACAGCAACCGAACAACATGCGAAAGAGATGTTACAAAGTGCTGCGGAATTAAAAAAT
ACGCTCAGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.261

100

0.595

Multiple sequence alignment