Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C5B40_RS03315 Genome accession   NZ_CP028917
Coordinates   682528..683172 (-) Length   214 a.a.
NCBI ID   WP_003085214.1    Uniprot ID   A0A0H2ZLY6
Organism   Pseudomonas aeruginosa strain JB2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 677528..688172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B40_RS03285 - 677999..679048 (+) 1050 WP_024947825.1 pyocin knob domain-containing protein -
  C5B40_RS03290 - 679048..679350 (+) 303 WP_024947824.1 hypothetical protein -
  C5B40_RS03295 - 679347..679571 (+) 225 WP_023107756.1 hypothetical protein -
  C5B40_RS03300 - 679977..680582 (+) 606 WP_024928380.1 aminodeoxychorismate/anthranilate synthase component II -
  C5B40_RS03305 trpD 680584..681633 (+) 1050 WP_003085203.1 anthranilate phosphoribosyltransferase -
  C5B40_RS03310 trpC 681630..682466 (+) 837 WP_003137410.1 indole-3-glycerol phosphate synthase TrpC -
  C5B40_RS03315 crp 682528..683172 (-) 645 WP_003085214.1 cAMP-activated global transcriptional regulator CRP Regulator
  C5B40_RS03320 - 683444..683866 (+) 423 WP_024947823.1 OsmC family protein -
  C5B40_RS03325 speD 684186..684980 (+) 795 WP_003085223.1 adenosylmethionine decarboxylase -
  C5B40_RS03330 coq7 685035..685682 (-) 648 WP_003085224.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  C5B40_RS03335 - 685782..686120 (-) 339 WP_003085225.1 histidine triad nucleotide-binding protein -
  C5B40_RS03340 - 686199..687680 (+) 1482 WP_003121853.1 AAA family ATPase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24225.01 Da        Isoelectric Point: 8.0525

>NTDB_id=249292 C5B40_RS03315 WP_003085214.1 682528..683172(-) (crp) [Pseudomonas aeruginosa strain JB2]
MVAITHTPKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEK
EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKVGDLAFLDVTGRVARTLLDLCQQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=249292 C5B40_RS03315 WP_003085214.1 682528..683172(-) (crp) [Pseudomonas aeruginosa strain JB2]
ATGGTAGCTATTACCCACACACCCAAACTCAAACACCTAGACAAGCTGCTCGCACACTGTCACCGCCGCCGCTACACCGC
AAAGAGCACCATCATCTATGCCGGCGATCGCTGCGAAACGCTGTTCTTCATCATCAAGGGTTCGGTCACCATCCTCATCG
AGGACGACGACGGCCGCGAAATGATCATCGGCTACCTCAACAGCGGTGATTTCTTCGGCGAGCTGGGATTGTTCGAAAAG
GAAGGCAGCGAACAGGAACGCAGCGCCTGGGTTCGCGCCAAGGTGGAATGCGAAGTCGCCGAGATCAGCTATGCGAAGTT
CCGCGAACTGTCGCAGCAGGACTCGGAGATCCTCTACACCCTCGGCAGCCAGATGGCCGACCGCCTGCGCAAGACCACCC
GCAAGGTGGGCGACCTGGCCTTCCTCGACGTCACCGGACGCGTCGCCCGCACCTTGCTGGACCTGTGCCAACAACCGGAC
GCCATGACCCACCCGGACGGCATGCAGATCAAGATCACCCGCCAGGAGATCGGCCGGATCGTCGGCTGCTCGCGGGAAAT
GGTCGGACGCGTGCTGAAGAGCCTGGAGGAGCAGGGCCTGGTGCATGTGAAAGGAAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.327

94.393

0.636
  crp Haemophilus influenzae Rd KW20

60.396

94.393

0.57
  crp Acinetobacter baumannii D1279779

54.545

92.523

0.505