Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJ12664_RS05255 Genome accession   NZ_CP028912
Coordinates   1005171..1005719 (+) Length   182 a.a.
NCBI ID   WP_002890071.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC 12664     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1000171..1010719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12664_RS05215 (CJ12664_1005) - 1000362..1000787 (+) 426 WP_002890069.1 GNAT family N-acetyltransferase -
  CJ12664_RS05220 (CJ12664_1006) - 1000851..1001470 (+) 620 Protein_1001 nitroreductase family protein -
  CJ12664_RS05230 (CJ12664_1007) - 1001470..1002075 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  CJ12664_RS05235 (CJ12664_1008) pgsA 1002200..1002736 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJ12664_RS05240 (CJ12664_1009) rseP 1002733..1003839 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  CJ12664_RS05245 (CJ12664_1010) - 1003832..1004698 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  CJ12664_RS05250 (CJ12664_1011) rpsF 1004785..1005159 (+) 375 WP_002890070.1 30S ribosomal protein S6 -
  CJ12664_RS05255 (CJ12664_1012) ssb 1005171..1005719 (+) 549 WP_002890071.1 single-stranded DNA-binding protein Machinery gene
  CJ12664_RS05260 (CJ12664_1013) rpsR 1005730..1005990 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  CJ12664_RS05265 (CJ12664_1014) lon 1006050..1008425 (-) 2376 WP_002853487.1 endopeptidase La -
  CJ12664_RS05270 (CJ12664_1015) - 1008442..1009089 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  CJ12664_RS05275 (CJ12664_1016) fliW 1009250..1009639 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  CJ12664_RS05280 (CJ12664_1017) proC 1009639..1010370 (+) 732 WP_108614560.1 pyrroline-5-carboxylate reductase Machinery gene
  CJ12664_RS05285 (CJ12664_1018) ctsT 1010367..1010669 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20594.53 Da        Isoelectric Point: 5.0431

>NTDB_id=249251 CJ12664_RS05255 WP_002890071.1 1005171..1005719(+) (ssb) [Campylobacter jejuni strain NCTC 12664]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNVPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=249251 CJ12664_RS05255 WP_002890071.1 1005171..1005719(+) (ssb) [Campylobacter jejuni strain NCTC 12664]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGTTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363

Multiple sequence alignment