Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CQB05_RS19540 Genome accession   NZ_CP023687
Coordinates   4263085..4264464 (-) Length   459 a.a.
NCBI ID   WP_011793447.1    Uniprot ID   A1TIT1
Organism   Paracidovorax citrulli strain KACC17005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4258085..4269464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQB05_RS19515 (CQB05_19515) - 4258688..4259980 (-) 1293 WP_011793452.1 O-antigen ligase family protein -
  CQB05_RS19520 (CQB05_19520) - 4260154..4261101 (+) 948 WP_011793451.1 capsular polysaccharide synthesis protein -
  CQB05_RS19525 (CQB05_19525) - 4261153..4261359 (-) 207 WP_011793450.1 zinc-finger domain-containing protein -
  CQB05_RS19530 (CQB05_19530) - 4261400..4262338 (-) 939 WP_011793449.1 branched-chain amino acid transaminase -
  CQB05_RS19535 (CQB05_19535) - 4262383..4262856 (-) 474 WP_011793448.1 hypothetical protein -
  CQB05_RS19540 (CQB05_19540) radA 4263085..4264464 (-) 1380 WP_011793447.1 DNA repair protein RadA Machinery gene
  CQB05_RS19545 (CQB05_19545) - 4264753..4265142 (+) 390 WP_011793446.1 hypothetical protein -
  CQB05_RS19550 (CQB05_19550) - 4265272..4266267 (+) 996 WP_011793445.1 2-dehydropantoate 2-reductase -
  CQB05_RS19555 (CQB05_19555) - 4266264..4266880 (+) 617 Protein_3966 glutathione S-transferase family protein -
  CQB05_RS19560 (CQB05_19560) - 4267100..4267879 (-) 780 WP_011793443.1 IclR family transcriptional regulator C-terminal domain-containing protein -
  CQB05_RS19565 (CQB05_19565) - 4267999..4269003 (+) 1005 WP_011793442.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 48130.54 Da        Isoelectric Point: 6.8197

>NTDB_id=249253 CQB05_RS19540 WP_011793447.1 4263085..4264464(-) (radA) [Paracidovorax citrulli strain KACC17005]
MAKDKTVFTCTECGGTSPRWLGKCPACGAWNTLVESVAEAGPGKNRYSTPQHAGLAQSQAVTPLSAIEAADVARTASGIE
ELDRVLGGGVVEGGVVLIGGDPGIGKSTLLLQALDALQRLGLPTLYVTGEESGAQVALRSRRLGLDHSQVNVLAEIQLEK
ILATVEATQPAVAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRAAKATGVSIILVGHVTKEGALAGPRVLEHMVDTVL
YFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDEG
GPSPRRLSVGLERDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLAITSSLRGKPLPKGFIAFGEVGL
AGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPRKPIEGLTIHAVERVEEAMEVVRGMG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=249253 CQB05_RS19540 WP_011793447.1 4263085..4264464(-) (radA) [Paracidovorax citrulli strain KACC17005]
ATGGCCAAAGACAAGACCGTTTTCACCTGTACCGAATGCGGCGGCACCAGCCCGCGCTGGCTTGGCAAGTGCCCTGCCTG
CGGGGCCTGGAACACGCTGGTGGAATCGGTGGCGGAAGCCGGGCCGGGCAAGAACCGCTACAGCACGCCGCAGCATGCGG
GCCTGGCGCAGTCGCAGGCCGTGACGCCGCTGTCGGCCATCGAGGCCGCCGACGTGGCGCGCACCGCCAGCGGCATCGAG
GAACTCGACCGGGTGCTGGGCGGCGGGGTGGTCGAGGGCGGCGTGGTCCTCATCGGTGGCGATCCGGGCATCGGCAAGTC
CACCCTGCTGCTGCAGGCGCTGGATGCGCTGCAGCGCCTGGGCCTGCCCACGCTCTACGTGACGGGCGAGGAGAGCGGGG
CGCAGGTGGCGCTGCGCTCGCGCCGGCTGGGGCTGGACCACAGCCAGGTCAACGTCCTGGCGGAAATCCAGCTCGAGAAG
ATCCTCGCCACCGTCGAGGCGACGCAGCCCGCCGTGGCCGTGATCGATTCCATCCAGACCGTGTATTCGGACCAGCTCAC
CAGCGCGCCGGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCGCACCTCACGCGGGCGGCCAAGGCCACCGGCGTGTCCA
TCATCCTCGTGGGCCACGTGACCAAGGAAGGGGCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTGCTG
TACTTCGAGGGCGATACGCACAGTCAGTTCCGGCTGGTGCGCGCCATCAAGAACCGCTTCGGCGCCGTGAACGAGATCGG
CGTGTTCGCCATGACCGAGAAGGGCCTCAAGGGCGTGACCAATCCCAGCGCCATCTTCTTGAGCCAGCACAGCGAGCCGG
TGCCCGGCAGCTGCGTGCTGGTCACGCTGGAAGGCACGCGCCCCATGCTGGTGGAGATCCAGGCCCTGGTGGACGAGGGC
GGGCCCAGCCCCCGGCGCCTGTCCGTGGGCCTGGAGCGCGACCGCCTCGCCATGCTGCTGGCCGTGCTGCACCGCCACGC
GGGCGTCGCCTGCATGGACCAGGACGTGTTCGTGAACGCCGTGGGCGGCGTGCGCATCAGCGAACCCGCGGCCGACCTGG
CGGTGATGCTGGCCATCACCAGCAGCCTGCGCGGCAAGCCCCTGCCCAAGGGCTTCATCGCTTTCGGCGAAGTCGGGCTG
GCGGGCGAGGTGCGCCCTGCGCCGCGCGGCCAGGAGCGCCTGAAGGAGGCCGCCAAGCTCGGTTTCACGATGGCCGTGGT
GCCCAAGGCCAACGCGCCCAGGAAGCCCATCGAGGGCCTGACGATCCATGCGGTGGAACGGGTGGAAGAGGCCATGGAAG
TGGTCCGCGGCATGGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1TIT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.913

100

0.49
  radA Streptococcus mitis NCTC 12261

46.711

99.346

0.464
  radA Streptococcus pneumoniae Rx1

48.499

94.336

0.458
  radA Streptococcus pneumoniae R6

48.499

94.336

0.458
  radA Streptococcus pneumoniae TIGR4

48.499

94.336

0.458
  radA Streptococcus pneumoniae D39

48.499

94.336

0.458
  radA Streptococcus mitis SK321

48.499

94.336

0.458

Multiple sequence alignment