Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CJ12664_RS03145 Genome accession   NZ_CP028912
Coordinates   595391..596164 (+) Length   257 a.a.
NCBI ID   WP_002858613.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC 12664     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 590391..601164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12664_RS03130 (CJ12664_0605) - 591240..593174 (-) 1935 WP_002890708.1 ribonuclease R family protein -
  CJ12664_RS03135 (CJ12664_0606) ilvC 593293..594315 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  CJ12664_RS03140 (CJ12664_0607) - 594319..595401 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  CJ12664_RS03145 (CJ12664_0608) dprA 595391..596164 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  CJ12664_RS03150 (CJ12664_0609) dprB 596161..596544 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  CJ12664_RS03155 (CJ12664_0610) - 596573..597412 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJ12664_RS03160 (CJ12664_0611) msrA 597588..598085 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJ12664_RS03165 (CJ12664_0612) ppa 598126..598644 (-) 519 WP_002867724.1 inorganic diphosphatase -
  CJ12664_RS03170 (CJ12664_0613) adk 598654..599232 (-) 579 WP_002859580.1 adenylate kinase -
  CJ12664_RS03175 (CJ12664_0614) aspS 599229..600980 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28864.66 Da        Isoelectric Point: 7.0853

>NTDB_id=249243 CJ12664_RS03145 WP_002858613.1 595391..596164(+) (dprA) [Campylobacter jejuni strain NCTC 12664]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=249243 CJ12664_RS03145 WP_002858613.1 595391..596164(+) (dprA) [Campylobacter jejuni strain NCTC 12664]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAATCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

48.75

93.385

0.455