Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CJ12664_RS03150 Genome accession   NZ_CP028912
Coordinates   596161..596544 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC 12664     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 591161..601544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12664_RS03130 (CJ12664_0605) - 591240..593174 (-) 1935 WP_002890708.1 ribonuclease R family protein -
  CJ12664_RS03135 (CJ12664_0606) ilvC 593293..594315 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  CJ12664_RS03140 (CJ12664_0607) - 594319..595401 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  CJ12664_RS03145 (CJ12664_0608) dprA 595391..596164 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  CJ12664_RS03150 (CJ12664_0609) dprB 596161..596544 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  CJ12664_RS03155 (CJ12664_0610) - 596573..597412 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJ12664_RS03160 (CJ12664_0611) msrA 597588..598085 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJ12664_RS03165 (CJ12664_0612) ppa 598126..598644 (-) 519 WP_002867724.1 inorganic diphosphatase -
  CJ12664_RS03170 (CJ12664_0613) adk 598654..599232 (-) 579 WP_002859580.1 adenylate kinase -
  CJ12664_RS03175 (CJ12664_0614) aspS 599229..600980 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=249244 CJ12664_RS03150 WP_002858579.1 596161..596544(+) (dprB) [Campylobacter jejuni strain NCTC 12664]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=249244 CJ12664_RS03150 WP_002858579.1 596161..596544(+) (dprB) [Campylobacter jejuni strain NCTC 12664]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449