Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CJ12661_RS03295 Genome accession   NZ_CP028911
Coordinates   638877..640850 (-) Length   657 a.a.
NCBI ID   WP_044305931.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC 12661     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 633877..645850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ12661_RS03280 (CJ12661_0643) kdpB 634293..636338 (+) 2046 WP_044305930.1 potassium-transporting ATPase subunit KdpB -
  CJ12661_RS03285 (CJ12661_0644) kdpC 636340..636948 (+) 609 WP_002856979.1 potassium-transporting ATPase subunit KdpC -
  CJ12661_RS03290 (CJ12661_0645) kdpD 636951..638882 (+) 1932 WP_002856839.1 sensor histidine kinase KdpD -
  CJ12661_RS03295 (CJ12661_0646) uvrB 638877..640850 (-) 1974 WP_044305931.1 excinuclease ABC subunit UvrB Machinery gene
  CJ12661_RS03300 (CJ12661_0647) - 641004..641234 (+) 231 WP_002852327.1 hypothetical protein -
  CJ12661_RS03305 (CJ12661_0648) - 641224..641466 (+) 243 WP_002854947.1 hypothetical protein -
  CJ12661_RS03310 (CJ12661_0649) Cj0683 641463..641900 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CJ12661_RS03315 (CJ12661_0650) priA 641882..643735 (+) 1854 WP_079005308.1 primosomal protein N' -
  CJ12661_RS03320 (CJ12661_0651) cipA 643745..645139 (-) 1395 WP_108574938.1 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75877.47 Da        Isoelectric Point: 7.0156

>NTDB_id=249199 CJ12661_RS03295 WP_044305931.1 638877..640850(-) (uvrB) [Campylobacter jejuni strain NCTC 12661]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANIIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKGLLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=249199 CJ12661_RS03295 WP_044305931.1 638877..640850(-) (uvrB) [Campylobacter jejuni strain NCTC 12661]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTCCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGTATAAAAAA
AGGCAACAAATATCAAACCTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATATCATTAAAGAACTTA
ATATACCCACTCTTATCATGAGTCACAACAAAAGCCTTTGTGCACAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTAGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGACAGCTCGACCAATGAAGACTTAGAGCGTTTAAGGCTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCGGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGGACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGACATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGATTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGAGTTGAAAATTATGCAAGGCATTTAACAGGGCTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTTATAGTCGATGAAAGCCATGTATCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCTACACCTGCACCTTTAGAA
CTTGAACTGAGTAAAGAAAATATCTTTCATCAAATCATGCGTCCTACAGGACTGCTTGATCCTTTGATAGAATTAAAAGA
TAGTGACAACCAAGTTGAAATTTTATTTGATGAAGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACCGTGC
TAACTAAAAAACTCGCTGAAGAACTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGACATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTGCTTAG
AGAAGGACTAGATCTACCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACGACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAAATCACAAAATCC
ATGCAAGAAGCTATGGATACTACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATTACCCCAAC
TTCAGTCAAACGCCATATTGAAGAGAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCAAAACTTGTCAAAGAATTAAGAAAGCAAATGCTTGAAGCAGCAAAAGCACTTGAG
TTTGAAAAAGCTGCCGCAATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Ultra-violet resistance protein B (UvrB)

(552-593)

UvrB interaction domain (UvrB_inter)

(158-246)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.772

98.63

0.501
  uvrB Streptococcus pneumoniae D39

50.772

98.63

0.501
  uvrB Streptococcus pneumoniae TIGR4

50.772

98.63

0.501