Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CP942_RS16680 Genome accession   NZ_CP023666
Coordinates   3379057..3379695 (+) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus paralicheniformis strain Bac48     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3374057..3384695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS16650 - 3374422..3374769 (-) 348 WP_224146417.1 SDR family oxidoreductase -
  CP942_RS16660 degQ 3375255..3375395 (+) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  CP942_RS16665 - 3375583..3376485 (+) 903 WP_105979882.1 polyprenyl synthetase family protein -
  CP942_RS16670 comX 3376469..3376642 (+) 174 WP_043927976.1 competence pheromone ComX -
  CP942_RS16675 comP 3376658..3378970 (+) 2313 WP_105979884.1 ATP-binding protein Regulator
  CP942_RS16680 comA 3379057..3379695 (+) 639 WP_003184849.1 response regulator transcription factor Regulator
  CP942_RS16685 - 3379712..3380101 (+) 390 WP_009329508.1 hotdog fold thioesterase -
  CP942_RS16690 mnhG 3380138..3380512 (-) 375 WP_023856153.1 monovalent cation/H(+) antiporter subunit G -
  CP942_RS16695 - 3380496..3380780 (-) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  CP942_RS16700 - 3380780..3381256 (-) 477 WP_020452787.1 Na+/H+ antiporter subunit E -
  CP942_RS16705 - 3381262..3382740 (-) 1479 WP_105979886.1 Na+/H+ antiporter subunit D -
  CP942_RS16710 - 3382733..3383074 (-) 342 WP_020452785.1 Na(+)/H(+) antiporter subunit C -
  CP942_RS16715 - 3383074..3383505 (-) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=249125 CP942_RS16680 WP_003184849.1 3379057..3379695(+) (comA) [Bacillus paralicheniformis strain Bac48]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=249125 CP942_RS16680 WP_003184849.1 3379057..3379695(+) (comA) [Bacillus paralicheniformis strain Bac48]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAGCATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACGTGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTACTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACTCAGCACGATCTTTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTATACAAATCAGGAAATCGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGTCT
GACTTCCGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGCGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment