Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   C1A39_RS08800 Genome accession   NZ_CP028896
Coordinates   1702298..1702591 (-) Length   97 a.a.
NCBI ID   WP_024704238.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1697298..1707591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1A39_RS08765 (C1A39_09010) - 1697699..1698142 (-) 444 WP_011681680.1 hypothetical protein -
  C1A39_RS10125 (C1A39_09015) - 1698216..1698554 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  C1A39_RS10130 (C1A39_09020) - 1698598..1698873 (-) 276 WP_011681681.1 hypothetical protein -
  C1A39_RS08775 (C1A39_09025) - 1698885..1699083 (-) 199 Protein_1680 helix-turn-helix transcriptional regulator -
  C1A39_RS08780 (C1A39_09030) - 1699332..1700525 (-) 1194 WP_014608740.1 acetate kinase -
  C1A39_RS08785 (C1A39_09035) comGH 1700581..1701537 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  C1A39_RS08790 (C1A39_09040) comGG 1701582..1701899 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG Machinery gene
  C1A39_RS08795 (C1A39_09045) comGF 1701877..1702314 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  C1A39_RS08800 (C1A39_09050) comGE 1702298..1702591 (-) 294 WP_024704238.1 competence type IV pilus minor pilin ComGE Machinery gene
  C1A39_RS08805 (C1A39_09055) comGD 1702563..1702991 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  C1A39_RS08810 (C1A39_09060) comGC 1702951..1703277 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  C1A39_RS08815 (C1A39_09065) comGB 1703274..1704374 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  C1A39_RS08820 (C1A39_09070) comGA/cglA/cilD 1704256..1705197 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  C1A39_RS08825 (C1A39_09075) - 1705278..1705640 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10844.78 Da        Isoelectric Point: 10.6199

>NTDB_id=249082 C1A39_RS08800 WP_024704238.1 1702298..1702591(-) (comGE) [Streptococcus thermophilus strain CS5]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMADNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQK
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=249082 C1A39_RS08800 WP_024704238.1 1702298..1702591(-) (comGE) [Streptococcus thermophilus strain CS5]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGAAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

43.299

100

0.433
  comGE Streptococcus mutans UA159

43.299

100

0.433
  comGE Lactococcus lactis subsp. cremoris KW2

36.082

100

0.361