Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CP942_RS05080 Genome accession   NZ_CP023666
Coordinates   1002452..1004281 (-) Length   609 a.a.
NCBI ID   WP_325034849.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain Bac48     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 997452..1009281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CP942_RS05040 - 997632..998267 (-) 636 WP_003180661.1 GTP pyrophosphokinase family protein -
  CP942_RS05045 - 998299..998664 (-) 366 WP_105979044.1 hypothetical protein -
  CP942_RS05050 - 998795..999367 (+) 573 WP_020450948.1 CYTH domain-containing protein -
  CP942_RS05055 - 999380..1000033 (+) 654 WP_105979045.1 lytic transglycosylase domain-containing protein -
  CP942_RS22360 - 1000104..1000271 (-) 168 WP_158700721.1 hypothetical protein -
  CP942_RS05065 - 1000518..1000916 (+) 399 WP_003180652.1 thiol management oxidoreductase -
  CP942_RS05070 spxH 1000913..1001815 (+) 903 WP_025811635.1 protease adaptor protein SpxH -
  CP942_RS22715 - 1002227..1002394 (+) 168 WP_023856663.1 hypothetical protein -
  CP942_RS05080 pepF 1002452..1004281 (-) 1830 WP_325034849.1 oligoendopeptidase F Regulator
  CP942_RS05085 - 1004494..1005642 (-) 1149 WP_105979047.1 competence protein CoiA family protein -
  CP942_RS05090 - 1005921..1007357 (+) 1437 WP_234025556.1 sensor histidine kinase -
  CP942_RS05095 - 1007380..1008099 (+) 720 WP_003180638.1 response regulator -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70351.85 Da        Isoelectric Point: 4.8544

>NTDB_id=249083 CP942_RS05080 WP_325034849.1 1002452..1004281(-) (pepF) [Bacillus paralicheniformis strain Bac48]
MAEEKKSKKLPSREEVKQEDTWRLEDIFPSDDAWSEEFQAVKELLPKLSEFKGRLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKAANLYTQAASATAYMVPEILSIQEEKLQQFLLEKEELKLYSHALEEINKERPHVLSEE
EEGILAEASDVLSSSSNTFGMLNNADMEFPEITDENGEKVQLTHGNYVTFLESENRDVRRAAFKAVYETYGRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSISEEVYDNLVSTINKHLPLLHRYVELRKKVLELDEVHMYDLYTPLVKDSGM
KVTYEQAKDYMLKGLTPLGEEYSSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYLLNTIDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHEIHSKAQ
EGEPLTPELLTSIYYDLNKKYFGDNIEIDKEIGLEWSRIPHFYYNYYVYQYATGFSAAQALSQQILKEGKSAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTSSEPIEAACKKFEEQLNEMEELLQKVNHS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=249083 CP942_RS05080 WP_325034849.1 1002452..1004281(-) (pepF) [Bacillus paralicheniformis strain Bac48]
GTGGCTGAAGAAAAAAAATCGAAGAAACTGCCTTCAAGAGAAGAGGTGAAGCAAGAAGACACGTGGAGACTTGAGGATAT
CTTCCCGTCAGATGATGCTTGGAGCGAGGAATTTCAAGCCGTTAAAGAACTGCTGCCCAAGCTTTCCGAATTCAAGGGCA
GGCTCGGCCATTCCGCCGATGATCTATATGAAGCGCTGACTTATCAGGATAAGGTGATGGAGCGTCTCGGGAAGCTGTAT
ACTTACGCTCACATGCGCTATGATCAGGATACTGGAAATTCTTTTTACCAAGGTCTCAATGATAAAGCGGCCAACCTCTA
TACCCAGGCAGCGAGCGCAACGGCCTACATGGTGCCGGAAATACTATCGATTCAGGAAGAAAAGCTTCAGCAGTTCCTTC
TGGAAAAAGAGGAGTTAAAGCTTTACTCGCATGCTCTCGAAGAAATCAATAAAGAGCGTCCTCATGTACTGAGCGAGGAG
GAGGAAGGGATTTTGGCCGAAGCGTCTGATGTTCTTTCATCTTCTTCCAACACGTTCGGCATGCTGAATAACGCCGATAT
GGAATTTCCGGAGATCACCGATGAAAATGGAGAAAAGGTACAGCTCACACACGGCAATTATGTCACCTTTTTGGAAAGCG
AGAACCGCGATGTCCGCCGCGCGGCATTCAAGGCGGTTTACGAAACATACGGCCGCTTTAAAAACACGCTCGCTTCCACG
CTCAGCGGAGCTGTGAAAAAAGACAACTTTTATGCGAAGGTTAAACATTATAAATCGGCGCGGGAAGCTGCTTTGTCGCG
AAACAGCATTTCTGAAGAAGTCTATGACAATCTTGTCAGCACGATCAACAAGCATCTCCCGCTTCTTCACCGCTATGTTG
AGCTTAGAAAAAAAGTGCTTGAGCTTGATGAGGTACACATGTATGACCTGTATACTCCGCTGGTAAAGGACTCTGGAATG
AAAGTTACCTACGAGCAGGCAAAGGACTATATGCTAAAAGGTTTGACGCCTTTAGGGGAAGAATATTCATCCATCCTGAA
AGAAGGCTTGAACAACCGCTGGGTCGATGTGTATGAAAACAAAGGAAAACGAAGCGGCGCTTATTCTTCAGGAACTTACG
GAACCAATCCGTATATTTTGATGAACTGGCAGGACAACGTCAATAATTTGTTTACGCTCGTCCATGAATTCGGCCATTCC
GTGCACAGCTACTATACGAGAAAATATCAGCCTTACCCGTACGGAAACTACAGCATTTTCGTAGCCGAAGTAGCTTCTAC
GACGAATGAAGCACTTTTGGGAGAATACTTGCTGAATACAATCGACGATGAAAAACAGCGGCTCTACATTTTGAATCATA
TGCTTGAAGGCTTCAAAGGAACGGTTTTCAGACAGACGATGTTTGCCGAATTTGAACATGAGATCCATAGCAAAGCCCAG
GAAGGGGAACCGCTGACACCTGAGCTGTTAACGAGCATCTACTATGATTTGAATAAGAAATATTTCGGTGACAATATTGA
GATTGATAAGGAAATCGGTCTTGAGTGGTCAAGAATACCGCATTTCTATTACAATTATTATGTGTATCAGTATGCGACAG
GCTTCAGTGCAGCTCAGGCACTCAGTCAGCAGATTTTAAAAGAAGGCAAATCGGCTGTTGACCGCTATATTGAGTTCTTG
AAAGCGGGTAGCTCGGATTATCCGATTGAAGTGCTGAAAAAAGCCGGTGTTGATATGACATCTTCGGAGCCGATCGAAGC
TGCGTGCAAAAAGTTTGAAGAGCAGCTGAACGAAATGGAAGAACTTTTGCAAAAAGTCAATCATTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.251

98.03

0.493

Multiple sequence alignment