Detailed information NTG0248923

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: CPU08_RS04025
• Genome accession: NZ_CP023655
• Coordinates: 791380..791862 (+)
• Length: 160 a.a.
• NCBI ID: WP_141822585.1
• Uniprot ID: -
• Organism: Pediococcus pentosaceus strain JQI-7
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 786380..796862

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CPU08_RS03980 (CPU08_03970)	-	786391..786633 (+)	243	WP_141822569.1	hypothetical protein	-
CPU08_RS03985 (CPU08_03975)	-	786707..787165 (+)	459	WP_260603364.1	helix-turn-helix domain-containing protein	-
CPU08_RS03990 (CPU08_03980)	-	787166..787441 (+)	276	WP_141822571.1	hypothetical protein	-
CPU08_RS03995 (CPU08_03985)	-	787675..787956 (+)	282	WP_141822573.1	hypothetical protein	-
CPU08_RS04000 (CPU08_03990)	-	787949..788800 (+)	852	WP_141822575.1	recombinase RecT	-
CPU08_RS04005 (CPU08_03995)	-	788760..789587 (+)	828	WP_141822577.1	PD-(D/E)XK nuclease-like domain-containing protein	-
CPU08_RS04010 (CPU08_04000)	-	789597..790427 (+)	831	WP_141822579.1	helix-turn-helix domain-containing protein	-
CPU08_RS04015 (CPU08_04005)	-	790430..791131 (+)	702	WP_141822581.1	putative HNHc nuclease	-
CPU08_RS04020 (CPU08_04010)	-	791100..791360 (+)	261	WP_141822583.1	hypothetical protein	-
CPU08_RS04025 (CPU08_04015)	ssb	791380..791862 (+)	483	WP_141822585.1	single-stranded DNA-binding protein	Machinery gene
CPU08_RS08785 (CPU08_04020)	-	791873..792190 (+)	318	WP_185831478.1	DeoR family transcriptional regulator	-
CPU08_RS08790	-	792193..792366 (+)	174	WP_185831479.1	hypothetical protein	-
CPU08_RS04035 (CPU08_04025)	-	792356..792715 (+)	360	WP_141822589.1	hypothetical protein	-
CPU08_RS04040 (CPU08_04030)	-	792721..793107 (+)	387	WP_141822591.1	hypothetical protein	-
CPU08_RS04045 (CPU08_04035)	-	793195..793611 (+)	417	WP_185831480.1	ArpU family phage packaging/lysis transcriptional regulator	-
CPU08_RS04055 (CPU08_04045)	-	793959..794483 (+)	525	WP_141822593.1	hypothetical protein	-
CPU08_RS04060	-	794721..794918 (+)	198	WP_141822595.1	hypothetical protein	-
CPU08_RS04065 (CPU08_04050)	-	794981..795796 (+)	816	WP_141822597.1	hypothetical protein	-
CPU08_RS04070 (CPU08_04055)	-	795866..796471 (+)	606	WP_141822599.1	terminase small subunit	-

Sequence

Protein

• Length: 160 a.a.
• Molecular weight: 18143.88 Da
• Isoelectric Point: 6.3630

>NTDB_id=248923 CPU08_RS04025 WP_141822585.1 791380..791862(+) (ssb) [Pediococcus pentosaceus strain JQI-7]
MINRTVLVGRLTRDPELKYTNSGRAVASFNIAVNRKFTNSQGEREADFINCVIWNKTAENFCNFIRKGSLVGIDGRIQTR
SYENQQGTRIYVTEVVAENFSLLESKNSSQNEQFEQNRPQSNGQNYQNKQNGQSSPSRNPNDPFTNGVQGIDINDDDLPF

Nucleotide

• Length: 483 bp

>NTDB_id=248923 CPU08_RS04025 WP_141822585.1 791380..791862(+) (ssb) [Pediococcus pentosaceus strain JQI-7]
ATGATTAATCGAACTGTTTTAGTTGGCCGGTTGACGCGTGATCCAGAATTGAAATACACCAACAGTGGAAGGGCGGTAGC
TAGCTTTAACATAGCCGTTAACCGTAAATTTACAAATTCACAGGGCGAGCGCGAAGCGGACTTTATTAACTGCGTTATTT
GGAATAAAACGGCGGAAAACTTCTGTAACTTCATTCGCAAAGGGTCACTGGTTGGAATTGATGGACGAATTCAAACTCGA
TCATACGAAAATCAACAAGGAACACGAATTTACGTTACTGAAGTTGTAGCCGAAAATTTTTCGCTGCTTGAGTCCAAAAA
CAGTAGTCAAAATGAACAATTTGAACAGAATAGACCTCAAAGCAATGGACAAAATTATCAGAATAAACAAAATGGTCAAT
CATCACCTAGTAGAAATCCTAACGACCCATTCACTAATGGCGTCCAAGGAATTGATATTAACGACGACGATTTACCGTTT
TAG

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (2-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	59.77	100	0.65
ssbA	Bacillus subtilis subsp. subtilis str. 168	54.07	100	0.581
ssbB	Bacillus subtilis subsp. subtilis str. 168	56.604	66.25	0.375