Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CPF12_RS05380 Genome accession   NZ_CP023643
Coordinates   1149484..1150023 (-) Length   179 a.a.
NCBI ID   WP_029091941.1    Uniprot ID   -
Organism   Brochothrix thermosphacta strain BII     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1144484..1155023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPF12_RS05360 (CPF12_05360) - 1144930..1146909 (-) 1980 WP_029091938.1 DHH family phosphoesterase -
  CPF12_RS05365 (CPF12_05365) - 1147261..1148265 (+) 1005 WP_080712942.1 YitT family protein -
  CPF12_RS05370 (CPF12_05370) - 1148282..1149058 (+) 777 WP_069119194.1 DUF2785 domain-containing protein -
  CPF12_RS05375 (CPF12_05375) rpsR 1149218..1149457 (-) 240 WP_029091940.1 30S ribosomal protein S18 -
  CPF12_RS05380 (CPF12_05380) ssbA 1149484..1150023 (-) 540 WP_029091941.1 single-stranded DNA-binding protein Machinery gene
  CPF12_RS05385 (CPF12_05385) rpsF 1150064..1150354 (-) 291 WP_029091942.1 30S ribosomal protein S6 -
  CPF12_RS05390 (CPF12_05390) - 1150551..1151174 (-) 624 WP_029091943.1 response regulator transcription factor -
  CPF12_RS05395 (CPF12_05395) - 1151742..1153124 (+) 1383 WP_069125005.1 aldehyde dehydrogenase -
  CPF12_RS05400 (CPF12_05400) - 1153274..1153786 (-) 513 WP_069120667.1 helix-turn-helix domain-containing protein -
  CPF12_RS12560 - 1153835..1153987 (-) 153 WP_154657732.1 hypothetical protein -
  CPF12_RS05405 (CPF12_05405) - 1154283..1154948 (-) 666 WP_029091346.1 DUF1129 domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19361.99 Da        Isoelectric Point: 4.9222

>NTDB_id=248854 CPF12_RS05380 WP_029091941.1 1149484..1150023(-) (ssbA) [Brochothrix thermosphacta strain BII]
MMNRVVLVGRLTKDPELRYTPAGAAVATFTLAVNRTFTNQQGDREADFVNCVVWRKAAENVANFLKKGSLAGVDGRLQTR
NYEANDGRRVYVTEVVAESVQFLEPRNANAGNSGASGSNQGGNNYNDDSSSYNGGNQQPQSNQGNAYNQNSQQSSKPAFS
NPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=248854 CPF12_RS05380 WP_029091941.1 1149484..1150023(-) (ssbA) [Brochothrix thermosphacta strain BII]
ATGATGAATCGTGTTGTTCTAGTGGGTCGTTTAACTAAGGATCCAGAACTTCGCTACACACCAGCTGGTGCTGCTGTAGC
CACGTTTACACTAGCTGTAAATCGTACGTTTACGAATCAACAAGGGGATCGAGAAGCTGACTTTGTTAACTGTGTCGTTT
GGCGTAAGGCGGCTGAAAACGTAGCTAATTTCTTGAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGTTTACAAACGCGT
AATTACGAAGCAAATGATGGTCGTCGCGTTTATGTAACTGAAGTGGTCGCTGAGAGTGTTCAATTTTTAGAGCCGCGTAA
TGCTAACGCAGGAAATTCAGGTGCGAGTGGAAGCAATCAAGGCGGCAACAATTATAATGACGATAGTAGTTCTTATAATG
GTGGAAATCAACAGCCACAATCAAATCAAGGAAATGCGTATAATCAAAACAGTCAACAATCGAGTAAGCCTGCTTTCAGC
AACCCGTTTGCTAGTGATGGCAAGCCAATCGATATTTCTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.085

100

0.715
  ssb Latilactobacillus sakei subsp. sakei 23K

58.659

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

59.218

0.38

Multiple sequence alignment