Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CPS94_RS08855 Genome accession   NZ_CP023565
Coordinates   1799498..1800052 (+) Length   184 a.a.
NCBI ID   WP_112193831.1    Uniprot ID   A0A2Z4VY05
Organism   Ligilactobacillus murinus strain CR147     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1790718..1815539 1799498..1800052 within 0


Gene organization within MGE regions


Location: 1790718..1815539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPS94_RS08820 (CPS94_08815) dnaN 1790718..1791857 (+) 1140 WP_112193822.1 DNA polymerase III subunit beta -
  CPS94_RS08825 (CPS94_08820) yaaA 1792106..1792330 (+) 225 WP_056958863.1 S4 domain-containing protein YaaA -
  CPS94_RS08830 (CPS94_08825) recF 1792339..1793556 (+) 1218 WP_112193824.1 DNA replication/repair protein RecF -
  CPS94_RS08835 (CPS94_08830) gyrB 1793577..1795535 (+) 1959 WP_112193826.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CPS94_RS08840 (CPS94_08835) gyrA 1795633..1798095 (+) 2463 WP_112193829.1 DNA gyrase subunit A -
  CPS94_RS08845 (CPS94_08840) - 1798194..1798830 (-) 637 Protein_1726 NAD(P)-dependent oxidoreductase -
  CPS94_RS08850 (CPS94_08845) rpsF 1799171..1799461 (+) 291 WP_004049701.1 30S ribosomal protein S6 -
  CPS94_RS08855 (CPS94_08850) ssb 1799498..1800052 (+) 555 WP_112193831.1 single-stranded DNA-binding protein Machinery gene
  CPS94_RS08860 (CPS94_08855) rpsR 1800074..1800310 (+) 237 WP_003695889.1 30S ribosomal protein S18 -
  CPS94_RS08865 (CPS94_08860) - 1800890..1801420 (-) 531 WP_112193833.1 hypothetical protein -
  CPS94_RS08870 (CPS94_08865) - 1801581..1801787 (+) 207 WP_004049696.1 hypothetical protein -
  CPS94_RS08875 (CPS94_08870) - 1801986..1802513 (+) 528 WP_112193836.1 helix-turn-helix domain-containing protein -
  CPS94_RS08880 (CPS94_08875) - 1802653..1803069 (+) 417 WP_269148576.1 IS3 family transposase -
  CPS94_RS08885 (CPS94_08880) - 1803242..1803517 (-) 276 WP_112193840.1 hypothetical protein -
  CPS94_RS08890 (CPS94_08885) - 1803585..1804547 (-) 963 WP_112193842.1 IS30 family transposase -
  CPS94_RS08895 (CPS94_08890) - 1804808..1805254 (+) 447 WP_112193844.1 hypothetical protein -
  CPS94_RS08900 (CPS94_08895) - 1805285..1805605 (+) 321 WP_112193846.1 ArsR family transcriptional regulator -
  CPS94_RS08905 (CPS94_08900) - 1805683..1806855 (+) 1173 Protein_1738 IS256 family transposase -
  CPS94_RS08910 (CPS94_08905) comA 1806961..1809120 (+) 2160 WP_112193848.1 peptide cleavage/export ABC transporter Regulator
  CPS94_RS08915 (CPS94_08910) - 1809134..1810216 (+) 1083 WP_112193850.1 HlyD family efflux transporter periplasmic adaptor subunit -
  CPS94_RS08920 (CPS94_08915) - 1810238..1810996 (+) 759 WP_112193852.1 LytTR family DNA-binding domain-containing protein -
  CPS94_RS08925 (CPS94_08920) - 1811173..1811313 (+) 141 WP_082613054.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  CPS94_RS08930 - 1811347..1811499 (+) 153 WP_112193854.1 Blp family class II bacteriocin -
  CPS94_RS11375 - 1811518..1811691 (+) 174 WP_143441406.1 DUF4175 domain-containing protein -
  CPS94_RS08935 (CPS94_08925) - 1811789..1812751 (-) 963 WP_309299713.1 IS3 family transposase -
  CPS94_RS08940 (CPS94_08930) - 1812637..1813350 (-) 714 WP_191981800.1 helix-turn-helix domain-containing protein -
  CPS94_RS08945 (CPS94_08935) - 1813506..1814489 (-) 984 WP_112193856.1 DUF1002 domain-containing protein -
  CPS94_RS08950 (CPS94_08940) pnuC 1814769..1815539 (+) 771 WP_112193858.1 nicotinamide riboside transporter PnuC -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20064.77 Da        Isoelectric Point: 4.6382

>NTDB_id=248479 CPS94_RS08855 WP_112193831.1 1799498..1800052(+) (ssb) [Ligilactobacillus murinus strain CR147]
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGSSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGSGFDTTSN
NSNNAADPFAGGQQIDISDDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=248479 CPS94_RS08855 WP_112193831.1 1799498..1800052(+) (ssb) [Ligilactobacillus murinus strain CR147]
TTGATCAATTCAGTTGTTCTAGTAGGTCGCTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGTGTAATGT
GGCGTAAAGCAGCTGAAAACTTTGCTAATTTTACCCACAAAGGTTCCTTAGTAGGAATCGAAGGCCGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAGCAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACAAATGATGCTTTTGGTGGTAGTGGTTTTGATACCACTTCAAAC
AATAGTAACAATGCGGCTGATCCATTTGCCGGTGGGCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4VY05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.081

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.15

100

0.571

Multiple sequence alignment