Detailed information NTG0024811

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NOC_RS03975
• Genome accession: NC_007484
• Coordinates: 781682..783016 (+)
• Length: 444 a.a.
• NCBI ID: WP_002812187.1
• Uniprot ID: Q3JD59
• Organism: Nitrosococcus oceani ATCC 19707
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 776682..788016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NOC_RS03955 (Noc_0719)	suhB	777061..777858 (+)	798	WP_002813897.1	inositol-1-monophosphatase	-
NOC_RS03960 (Noc_0720)	typA	777994..779823 (+)	1830	WP_002813024.1	translational GTPase TypA	-
NOC_RS18330 (Noc_0721)	-	779828..780055 (+)	228	WP_002813794.1	PP0621 family protein	-
NOC_RS03970 (Noc_0722)	-	780027..781685 (+)	1659	WP_002814143.1	sensor histidine kinase	-
NOC_RS03975 (Noc_0723)	pilR	781682..783016 (+)	1335	WP_002812187.1	sigma-54-dependent transcriptional regulator	Regulator
NOC_RS03980 (Noc_0724)	-	783643..784791 (+)	1149	WP_036497973.1	hypothetical protein	-
NOC_RS03985 (Noc_0725)	-	785214..786434 (+)	1221	WP_036498086.1	hypothetical protein	-
NOC_RS03990 (Noc_0726)	-	786753..787544 (+)	792	WP_002813369.1	hypothetical protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 48799.47 Da
• Isoelectric Point: 7.7348

>NTDB_id=24811 NOC_RS03975 WP_002812187.1 781682..783016(+) (pilR) [Nitrosococcus oceani ATCC 19707]
MKGRPVVLIVDDEPDILELLELTLAPLGVVCQKASDLARARQHLQQQSFDFCLTDMRLPDGDGIELVRLISQYCPETPVA
VITAHGNVETAVAALKAGAFDFISKPVDLQALRNLVKRALKLPLSYPKMERRTRHRLLGESAAMRGVRAQIAKLARSQAP
VYISGESGTGKELVARLIHEQGPRSAGSFVPVNCGAIPTELMESEFFGHKKGSFSGAVGDQEGLFHAADGGTLFLDEVAD
LSLPMQVKLLRAIQEKSVRPIGSQKEIAVDVRILCATHKDLATLVRQGNFRQDLFYRLNVIELAVPSLRQRTSDIFQLAG
HILNRLAETHGDTPFKLAPDALAALQAYLFPGNVRELENILERAVTLCESETIGAKDLRLPQVELPSTSAFLPANSLEEH
LAGLEKQAILQALEQTRYNKTAAAKILGITFRALRYRLKKLELE

Nucleotide

• Length: 1335 bp

>NTDB_id=24811 NOC_RS03975 WP_002812187.1 781682..783016(+) (pilR) [Nitrosococcus oceani ATCC 19707]
ATGAAGGGACGCCCCGTGGTCCTTATAGTGGACGATGAGCCGGATATTCTGGAATTACTGGAGCTTACCCTGGCGCCCTT
GGGTGTTGTCTGCCAAAAAGCGAGTGATCTTGCCAGGGCCCGTCAGCATCTGCAGCAACAGTCCTTCGATTTCTGTTTGA
CTGATATGCGTCTTCCGGATGGAGATGGCATCGAGCTGGTTAGGCTGATTAGTCAGTACTGCCCGGAAACGCCAGTGGCG
GTGATTACCGCCCATGGCAACGTGGAGACTGCCGTTGCGGCCTTGAAAGCTGGCGCTTTTGATTTTATCTCAAAACCGGT
GGATTTACAGGCGCTGCGCAATCTGGTCAAGAGGGCGCTAAAACTTCCTCTTTCCTATCCCAAAATGGAAAGGCGAACCC
GCCACCGGTTACTTGGGGAGTCGGCCGCCATGCGGGGAGTGCGCGCCCAAATTGCCAAGCTGGCCCGTAGTCAAGCGCCG
GTTTACATTAGTGGCGAATCGGGCACGGGTAAGGAACTAGTTGCTAGGCTTATCCATGAGCAAGGGCCCCGTTCGGCGGG
TTCCTTCGTACCTGTCAATTGCGGCGCTATACCCACCGAGCTGATGGAAAGTGAATTTTTTGGTCATAAAAAGGGCAGTT
TTAGTGGCGCTGTTGGTGATCAGGAGGGGTTGTTTCACGCCGCGGATGGGGGCACCCTGTTTTTGGATGAAGTGGCCGAT
TTATCTCTCCCCATGCAGGTCAAGCTTCTGCGGGCTATCCAGGAGAAGAGCGTGCGGCCCATCGGCAGCCAGAAAGAAAT
TGCCGTTGATGTCCGTATTCTTTGTGCTACCCATAAAGATCTGGCTACCTTGGTGCGACAAGGCAACTTTCGCCAGGATC
TTTTCTACCGGCTCAATGTTATTGAATTGGCTGTTCCTTCCTTGAGACAGCGGACAAGTGATATTTTCCAGCTAGCCGGA
CACATCTTGAACAGGCTCGCCGAGACCCATGGGGATACTCCTTTTAAACTGGCGCCCGATGCTTTGGCAGCGTTGCAAGC
TTATCTCTTTCCCGGCAATGTGCGAGAGCTGGAAAATATTTTGGAGCGGGCCGTAACACTATGCGAATCCGAAACCATTG
GGGCAAAGGATCTGCGCTTGCCCCAAGTAGAATTGCCTAGTACCTCAGCATTCCTTCCTGCAAATTCTTTAGAAGAGCAT
TTAGCGGGATTAGAAAAACAGGCTATTCTCCAAGCTCTCGAACAAACCCGCTACAATAAAACCGCTGCTGCTAAAATTCT
AGGCATTACCTTCCGCGCCTTACGTTACCGGTTAAAAAAACTGGAGCTAGAATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (404-441)

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

3D structure

• AlphaFold DB: Q3JD59

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.247	100	0.624
pilR	Acinetobacter baumannii strain A118	48.918	100	0.509
luxO	Vibrio cholerae strain A1552	36.937	100	0.369