Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CO688_RS03285 Genome accession   NZ_CP023516
Coordinates   676209..677420 (-) Length   403 a.a.
NCBI ID   WP_096743229.1    Uniprot ID   -
Organism   Pasteurella multocida strain FDAARGOS_384     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 671209..682420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO688_RS03255 (CO688_03255) raiA 671985..672302 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  CO688_RS03260 (CO688_03260) - 672547..673920 (-) 1374 WP_096743226.1 sodium:alanine symporter family protein -
  CO688_RS03265 (CO688_03265) - 674369..674638 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  CO688_RS03270 (CO688_03270) yacG 674638..674841 (-) 204 WP_083004817.1 DNA gyrase inhibitor YacG -
  CO688_RS03275 (CO688_03275) coaE 674852..675472 (-) 621 WP_096743227.1 dephospho-CoA kinase -
  CO688_RS03280 (CO688_03280) - 675484..676209 (-) 726 WP_096743228.1 A24 family peptidase -
  CO688_RS03285 (CO688_03285) pilC 676209..677420 (-) 1212 WP_096743229.1 type II secretion system F family protein Machinery gene
  CO688_RS03290 (CO688_03290) pilB 677420..678808 (-) 1389 WP_096743230.1 GspE/PulE family protein Machinery gene
  CO688_RS03295 (CO688_03295) pilA 678808..679242 (-) 435 WP_083004804.1 prepilin peptidase-dependent pilin Machinery gene
  CO688_RS03300 (CO688_03300) ampD 679402..679968 (+) 567 WP_083004802.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CO688_RS03305 (CO688_03305) rppH 680554..681150 (+) 597 WP_083004799.1 RNA pyrophosphohydrolase -
  CO688_RS03310 (CO688_03310) - 681153..681947 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46156.13 Da        Isoelectric Point: 9.7864

>NTDB_id=248059 CO688_RS03285 WP_096743229.1 676209..677420(-) (pilC) [Pasteurella multocida strain FDAARGOS_384]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQFSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASHIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCTQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLLHFIPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=248059 CO688_RS03285 WP_096743229.1 676209..677420(-) (pilC) [Pasteurella multocida strain FDAARGOS_384]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGTTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCCATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCTACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTACACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGGCGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAATTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATCTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.642

100

0.489
  pilC Haemophilus influenzae 86-028NP

48.395

100

0.486
  pilC Glaesserella parasuis strain SC1401

39.012

100

0.392

Multiple sequence alignment