Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   CO687_RS09825 Genome accession   NZ_CP023511
Coordinates   1995319..1996323 (-) Length   334 a.a.
NCBI ID   WP_096755359.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1990319..2001323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS10665 (CO687_09805) - 1991755..1992126 (-) 372 WP_045773786.1 hypothetical protein -
  CO687_RS09815 (CO687_09815) - 1992861..1994174 (-) 1314 WP_048778536.1 glycosyltransferase family 4 protein -
  CO687_RS09820 (CO687_09820) - 1994176..1995174 (-) 999 WP_008809010.1 glycosyltransferase -
  CO687_RS09825 (CO687_09825) ccpA 1995319..1996323 (-) 1005 WP_096755359.1 catabolite control protein A Regulator
  CO687_RS09830 (CO687_09830) - 1996488..1997570 (+) 1083 WP_061585221.1 Xaa-Pro peptidase family protein -
  CO687_RS10670 (CO687_09835) - 1997621..1997728 (-) 108 Protein_1879 DNA-entry nuclease -
  CO687_RS09840 (CO687_09840) - 1998021..1999067 (+) 1047 WP_096755360.1 iron ABC transporter permease -
  CO687_RS09845 (CO687_09845) - 1999069..1999823 (+) 755 Protein_1881 ABC transporter ATP-binding protein -
  CO687_RS09850 (CO687_09850) - 1999968..2000996 (+) 1029 WP_061583530.1 ABC transporter substrate-binding protein -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 37090.19 Da        Isoelectric Point: 6.5152

>NTDB_id=247994 CO687_RS09825 WP_096755359.1 1995319..1996323(-) (ccpA) [Streptococcus gordonii strain FDAARGOS_371]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPSITNSYFS
TLAKGIDDIAEMYKYNIVLANSDEDDDKEVSVVNTLFSKQVDGIIFMGYHLTEKIRSEFSRSRTPVVLAGTIDVEHQLPS
VNIDYKQATIDAITFLAKRNKKIAFVCGPLVDDINGKVRLSGYKTALKSKKLAYSEGLVFESKYSYDDGYNLAERVIASK
ATAAFVTGDELAAGLLNGLADRGVKIPEDFEIITSDDSQISRYTRPNLSTISQPLYDLGAISMRMLTKIMHKEELEEREV
VLSHGIYERDSTRK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=247994 CO687_RS09825 WP_096755359.1 1995319..1996323(-) (ccpA) [Streptococcus gordonii strain FDAARGOS_371]
ATGAACACAGACGATACAGTAACCATTTATGATGTCGCCCGTGAAGCAGGGGTTTCTATGGCGACAGTTAGTCGTGTAGT
TAATGGAAACAAGAATGTAAAAGAAAACACTCGGAAAAAAGTTTTGGAAGTAATTGATCGCCTTGATTATCGTCCAAATG
CAGTAGCTCGTGGTTTGGCTAGCAAGAAGACTACGACAGTTGGTGTTGTGATTCCAAGTATTACAAATAGTTATTTCTCA
ACACTCGCCAAGGGAATTGATGATATTGCTGAGATGTATAAATACAATATCGTCCTAGCAAATAGTGACGAGGATGATGA
TAAGGAAGTTTCAGTTGTAAACACTCTCTTTTCGAAACAAGTAGATGGTATTATCTTTATGGGTTACCACCTTACTGAAA
AGATTCGTTCAGAATTTTCACGCTCACGCACGCCAGTTGTCTTGGCTGGAACTATTGATGTGGAGCACCAATTGCCAAGT
GTTAATATAGATTATAAACAGGCTACGATTGACGCTATCACATTCCTTGCTAAGCGCAATAAAAAAATTGCCTTTGTATG
TGGACCTTTAGTTGATGATATCAATGGAAAAGTACGCTTATCCGGTTATAAAACGGCTCTTAAGAGCAAAAAGCTGGCAT
ACAGCGAAGGTCTTGTTTTTGAGTCTAAGTATAGTTATGATGATGGCTATAATTTAGCTGAAAGAGTAATTGCTTCTAAA
GCAACGGCTGCCTTTGTGACAGGTGATGAGCTGGCAGCAGGTCTTTTAAACGGACTAGCTGATCGCGGAGTAAAAATTCC
AGAGGATTTTGAGATTATCACTAGCGATGATTCACAAATATCCCGCTATACACGTCCAAATTTGTCGACCATCAGCCAGC
CTTTATATGATTTAGGTGCTATTAGTATGCGTATGCTGACTAAAATTATGCACAAGGAAGAGTTGGAAGAACGCGAAGTT
GTTCTATCTCATGGTATTTACGAACGGGACTCAACTAGAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

98.802

100

0.988

  ccpA Streptococcus pneumoniae D39

87.126

100

0.871

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.1

99.102

0.566


Multiple sequence alignment