Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   CO687_RS00455 Genome accession   NZ_CP023511
Coordinates   84377..85432 (-) Length   351 a.a.
NCBI ID   WP_096754715.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 79377..90432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS00425 (CO687_00425) - 80425..80724 (-) 300 WP_012000046.1 YlxQ-related RNA-binding protein -
  CO687_RS00430 (CO687_00430) - 80717..81013 (-) 297 WP_008808548.1 YlxR family protein -
  CO687_RS00435 (CO687_00435) nusA 81024..82265 (-) 1242 WP_046165135.1 transcription termination factor NusA -
  CO687_RS00440 (CO687_00440) rimP 82310..82798 (-) 489 WP_008808546.1 ribosome maturation factor RimP -
  CO687_RS00445 (CO687_00445) trmB 82910..83545 (-) 636 WP_045772936.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  CO687_RS00450 (CO687_00450) ccrZ 83542..84336 (-) 795 WP_008808544.1 cell cycle regulator CcrZ -
  CO687_RS00455 (CO687_00455) pptB 84377..85432 (-) 1056 WP_096754715.1 ABC transporter permease Regulator
  CO687_RS00460 (CO687_00460) pptA 85429..86160 (-) 732 WP_046165133.1 ABC transporter ATP-binding protein Regulator
  CO687_RS00465 (CO687_00465) - 86299..86715 (+) 417 WP_045772933.1 HIT family protein -
  CO687_RS00470 (CO687_00470) - 86726..87028 (+) 303 WP_045772932.1 hypothetical protein -
  CO687_RS00475 (CO687_00475) - 87078..88289 (-) 1212 WP_096754716.1 LCP family protein -
  CO687_RS00480 (CO687_00480) - 88296..88820 (-) 525 WP_096754717.1 GNAT family N-acetyltransferase -
  CO687_RS00485 (CO687_00485) tsaE 88820..89266 (-) 447 WP_096754718.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 351 a.a.        Molecular weight: 41311.72 Da        Isoelectric Point: 10.2979

>NTDB_id=247934 CO687_RS00455 WP_096754715.1 84377..85432(-) (pptB) [Streptococcus gordonii strain FDAARGOS_371]
MREVFAKRRLDFRNQCVKYLRYVLNDHFVLFLMVFLGFTAVQYSQLLRNFPKNHLPIWLAIVFLSLGLVFMGRIATYLEK
PDSLFLLAKEEEVRIYVGKQRRNSFILWGILQTLVLLLLAPLFLALGVPIWGFTLYCLFLFALKALVFQWKSRKFYLQEG
LDWKSLIAYEERRQQRILQFFALFTNVKGISSSVKRRAYLDFLTNRLSKNQEKVWDNLFLRSYLRNGDFFALSLRLLILS
LLIIIFLPQSMIATVFVGLFQYLLLFQLLALYDAYDYQYLIKLFPLEESAKVKGAKRVITSIGAVVLLVELLAALLFFKE
KIMVLFILLVYLILYAVYLPYKLKGLVDERA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=247934 CO687_RS00455 WP_096754715.1 84377..85432(-) (pptB) [Streptococcus gordonii strain FDAARGOS_371]
ATGAGAGAAGTATTTGCTAAGCGCAGACTGGATTTTCGGAACCAGTGTGTAAAATATCTGCGCTATGTTTTGAATGACCA
CTTTGTTCTATTTTTAATGGTTTTCTTGGGCTTTACAGCGGTTCAATACAGCCAGTTGCTTCGCAATTTTCCTAAAAATC
ATTTGCCTATCTGGCTAGCCATAGTCTTCCTTTCACTGGGCTTGGTTTTTATGGGCAGGATTGCTACCTATCTTGAAAAG
CCAGATAGCCTCTTTCTTTTAGCTAAGGAAGAAGAAGTACGTATCTATGTCGGCAAACAAAGGCGAAATTCTTTTATTCT
TTGGGGAATTTTGCAAACCTTGGTTTTGCTTCTCTTGGCACCTCTTTTTCTAGCCTTAGGTGTGCCTATATGGGGCTTTA
CTCTATATTGTTTGTTCCTGTTTGCTTTGAAAGCTCTGGTATTTCAATGGAAAAGTCGGAAATTCTATTTGCAGGAAGGG
CTTGATTGGAAGTCTCTAATTGCCTACGAAGAGAGACGTCAACAGCGAATTTTGCAATTTTTTGCTCTCTTTACGAATGT
TAAGGGAATATCAAGTAGCGTAAAAAGACGAGCTTATTTAGATTTCTTGACCAACCGCCTGTCCAAGAACCAAGAGAAAG
TTTGGGACAATCTCTTCTTGCGTTCTTATTTGAGAAATGGGGACTTTTTTGCTCTTAGTCTACGTTTGTTGATTTTATCA
TTGCTGATTATTATTTTTCTACCTCAAAGCATGATTGCAACAGTCTTTGTCGGTCTTTTTCAATATCTCTTGCTCTTTCA
GCTTCTAGCCCTGTATGATGCTTATGATTATCAATATTTAATCAAACTCTTCCCTCTAGAGGAAAGTGCAAAGGTTAAAG
GAGCTAAACGAGTTATCACTAGCATTGGAGCAGTCGTATTGCTCGTAGAATTATTGGCAGCTCTGCTATTCTTTAAAGAA
AAAATAATGGTCCTTTTTATCCTGCTTGTATACCTGATACTTTACGCAGTTTATCTACCTTACAAGCTTAAAGGATTGGT
TGACGAAAGGGCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

50

99.145

0.496

  pptB Streptococcus thermophilus LMD-9

49.425

99.145

0.49


Multiple sequence alignment