Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AOY63_RS02290 Genome accession   NZ_CP028764
Coordinates   506695..507327 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain A10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 501695..512327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY63_RS02265 (AOY63_02420) yhfG 501827..501994 (+) 168 WP_000736860.1 YhfG family protein -
  AOY63_RS02270 (AOY63_02425) fic 501984..502586 (+) 603 WP_001280645.1 putative adenosine monophosphate-protein transferase Fic -
  AOY63_RS02275 (AOY63_02430) pabA 502618..503181 (+) 564 WP_000601857.1 aminodeoxychorismate synthase component 2 -
  AOY63_RS02280 (AOY63_02435) argD 503267..504487 (+) 1221 WP_000963771.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AOY63_RS02285 (AOY63_02440) yhfK 504554..506644 (-) 2091 WP_001306309.1 YccS/YhfK family putative transporter -
  AOY63_RS02290 (AOY63_02445) crp 506695..507327 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AOY63_RS02295 (AOY63_02455) yhfA 507629..508033 (+) 405 WP_001148908.1 OsmC family protein -
  AOY63_RS02300 (AOY63_02460) prkB 508088..508957 (-) 870 WP_001274675.1 phosphoribulokinase -
  AOY63_RS02305 (AOY63_02465) yheU 509011..509229 (-) 219 WP_000907085.1 YheU family protein -
  AOY63_RS02310 (AOY63_02470) yheT 509223..510245 (-) 1023 WP_000057419.1 hydrolase -
  AOY63_RS02315 (AOY63_02475) yheS 510245..512158 (-) 1914 WP_000634839.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=247804 AOY63_RS02290 WP_000242755.1 506695..507327(-) (crp) [Escherichia coli strain A10]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=247804 AOY63_RS02290 WP_000242755.1 506695..507327(-) (crp) [Escherichia coli strain A10]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGATGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467