Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CO689_RS01725 Genome accession   NZ_CP023497
Coordinates   156406..157035 (-) Length   209 a.a.
NCBI ID   WP_002481662.1    Uniprot ID   -
Organism   Staphylococcus simulans strain FDAARGOS_383     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 151406..162035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO689_RS01695 (CO689_01695) - 151874..153112 (-) 1239 WP_002481656.1 aminopeptidase -
  CO689_RS01700 (CO689_01700) - 153149..153355 (-) 207 WP_002481657.1 DUF1128 family protein -
  CO689_RS01705 (CO689_01705) - 153579..154043 (+) 465 WP_002481658.1 low molecular weight protein-tyrosine-phosphatase -
  CO689_RS01710 (CO689_01710) - 154051..154341 (+) 291 WP_002481659.1 hypothetical protein -
  CO689_RS01715 (CO689_01715) - 154472..155548 (+) 1077 WP_002481660.1 YihY/virulence factor BrkB family protein -
  CO689_RS01720 (CO689_01720) - 155757..156335 (+) 579 WP_002481661.1 carbonic anhydrase -
  CO689_RS01725 (CO689_01725) vraR 156406..157035 (-) 630 WP_002481662.1 response regulator transcription factor Regulator
  CO689_RS01730 (CO689_01730) vraS 157025..158068 (-) 1044 WP_002481663.1 sensor histidine kinase Regulator
  CO689_RS01735 (CO689_01735) liaF 158065..158766 (-) 702 WP_002481664.1 cell wall-active antibiotics response protein LiaF -
  CO689_RS01740 (CO689_01740) - 158782..159177 (-) 396 WP_002481665.1 hypothetical protein -
  CO689_RS01745 (CO689_01745) map 159293..160057 (-) 765 WP_002481666.1 type I methionyl aminopeptidase -
  CO689_RS01750 (CO689_01750) - 160277..161263 (+) 987 WP_002481667.1 aromatic acid exporter family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23719.32 Da        Isoelectric Point: 4.6245

>NTDB_id=247704 CO689_RS01725 WP_002481662.1 156406..157035(-) (vraR) [Staphylococcus simulans strain FDAARGOS_383]
MAIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGKSGKEAIEKAHELQPDLILMDLLMEDMDGVEATMQIKKDLPQIKVL
MLTSYIEDNEVYRALDAGVDSYILKTTSASDIAEAIRKTYRNEAVFEAEVLVKMRNRMNQRAELYELLTDREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=247704 CO689_RS01725 WP_002481662.1 156406..157035(-) (vraR) [Staphylococcus simulans strain FDAARGOS_383]
ATGGCGATTAAAGTATTATTTGTCGATGACCACGAAATGGTTCGTATCGGCATCTCAAGTTATTTATCTACACAACCTGA
TATCGAAGTCGTCGGGGAAGGCAAATCAGGTAAAGAAGCAATTGAAAAAGCTCATGAATTGCAGCCTGATTTAATCTTGA
TGGATTTGTTGATGGAAGACATGGATGGCGTAGAAGCTACAATGCAGATTAAAAAAGATTTACCTCAGATTAAAGTATTG
ATGCTGACAAGTTATATTGAGGATAATGAAGTGTATCGTGCTTTAGACGCTGGGGTAGACAGTTATATTCTAAAAACGAC
GAGCGCAAGTGATATCGCAGAAGCGATTCGTAAAACATATCGTAACGAAGCGGTGTTTGAAGCGGAAGTACTTGTTAAAA
TGCGTAATCGCATGAATCAACGTGCTGAATTATATGAATTATTAACAGATAGAGAAATGGAAATTTTATTGTTAATCGCA
AAAGGTTATTCTAACCAAGAAATCGCCAGTGCGTCACATATTACGATTAAAACAGTTAAAACACATGTGAGTAATATATT
AAGCAAGCTAGAAGTTCAAGACAGAACACAAGCTGTTATTTACGCATTCCAACACGATTTAATTCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.431

100

0.904
  degU Bacillus subtilis subsp. subtilis str. 168

34.375

100

0.368

Multiple sequence alignment