Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | FORC71_RS14860 | Genome accession | NZ_CP023485 |
| Coordinates | 2941416..2942009 (-) | Length | 197 a.a. |
| NCBI ID | WP_025631084.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain FORC_071 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2936416..2947009
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC71_RS14840 (FORC71_2653) | aroB | 2937292..2938392 (-) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
| FORC71_RS14845 (FORC71_2654) | aroK | 2938424..2938942 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FORC71_RS14850 (FORC71_2655) | pilQ | 2939131..2940879 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| FORC71_RS14855 (FORC71_2656) | pilP | 2940911..2941426 (-) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| FORC71_RS14860 (FORC71_2657) | pilO | 2941416..2942009 (-) | 594 | WP_025631084.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FORC71_RS14865 (FORC71_2658) | pilN | 2942002..2942580 (-) | 579 | WP_005480484.1 | PilN domain-containing protein | Machinery gene |
| FORC71_RS14870 (FORC71_2659) | pilM | 2942564..2943580 (-) | 1017 | WP_020839764.1 | type IV pilus assembly protein PilM | Machinery gene |
| FORC71_RS14875 (FORC71_2660) | - | 2943723..2946293 (+) | 2571 | WP_005496567.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23125.65 Da Isoelectric Point: 4.8225
>NTDB_id=247636 FORC71_RS14860 WP_025631084.1 2941416..2942009(-) (pilO) [Vibrio parahaemolyticus strain FORC_071]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLFIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLFIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=247636 FORC71_RS14860 WP_025631084.1 2941416..2942009(-) (pilO) [Vibrio parahaemolyticus strain FORC_071]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTTTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCGGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTTTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCGGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
93.684 |
96.447 |
0.904 |
| pilO | Vibrio cholerae strain A1552 |
72.081 |
100 |
0.721 |