Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | FORC71_RS13485 | Genome accession | NZ_CP023485 |
| Coordinates | 2686549..2687418 (+) | Length | 289 a.a. |
| NCBI ID | WP_025533026.1 | Uniprot ID | A0AA41A9T5 |
| Organism | Vibrio parahaemolyticus strain FORC_071 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2681549..2692418
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC71_RS13465 (FORC71_2432) | nadC | 2681949..2682836 (+) | 888 | WP_005484834.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FORC71_RS13470 (FORC71_2433) | pilA | 2683099..2683548 (+) | 450 | WP_025557611.1 | pilin | Machinery gene |
| FORC71_RS13475 (FORC71_2434) | pilB | 2683552..2685237 (+) | 1686 | WP_120416796.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC71_RS13480 (FORC71_2435) | pilC | 2685261..2686484 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| FORC71_RS13485 (FORC71_2436) | pilD | 2686549..2687418 (+) | 870 | WP_025533026.1 | A24 family peptidase | Machinery gene |
| FORC71_RS13490 (FORC71_2437) | coaE | 2687419..2688033 (+) | 615 | WP_065779040.1 | dephospho-CoA kinase | - |
| FORC71_RS13495 (FORC71_2438) | zapD | 2688061..2688801 (+) | 741 | WP_015297254.1 | cell division protein ZapD | - |
| FORC71_RS13500 (FORC71_2439) | yacG | 2688870..2689064 (+) | 195 | WP_005462546.1 | DNA gyrase inhibitor YacG | - |
| FORC71_RS13505 (FORC71_2440) | rplS | 2689410..2689763 (-) | 354 | WP_005462554.1 | 50S ribosomal protein L19 | - |
| FORC71_RS13510 (FORC71_2441) | trmD | 2689805..2690548 (-) | 744 | WP_005462562.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FORC71_RS13515 (FORC71_2442) | rimM | 2690576..2691124 (-) | 549 | WP_005462552.1 | ribosome maturation factor RimM | - |
| FORC71_RS13520 (FORC71_2443) | rpsP | 2691153..2691401 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32405.49 Da Isoelectric Point: 7.1971
>NTDB_id=247624 FORC71_RS13485 WP_025533026.1 2686549..2687418(+) (pilD) [Vibrio parahaemolyticus strain FORC_071]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV
Nucleotide
Download Length: 870 bp
>NTDB_id=247624 FORC71_RS13485 WP_025533026.1 2686549..2687418(+) (pilD) [Vibrio parahaemolyticus strain FORC_071]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
89.273 |
100 |
0.893 |
| pilD | Vibrio cholerae strain A1552 |
73.611 |
99.654 |
0.734 |
| pilD | Acinetobacter baumannii D1279779 |
52.612 |
92.734 |
0.488 |
| pilD | Acinetobacter nosocomialis M2 |
52.239 |
92.734 |
0.484 |
| pilD | Neisseria gonorrhoeae MS11 |
47.101 |
95.502 |
0.45 |