Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   FORC71_RS05150 Genome accession   NZ_CP023485
Coordinates   1031998..1034256 (+) Length   752 a.a.
NCBI ID   WP_065780657.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_071     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1026998..1039256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC71_RS05125 (FORC71_0914) - 1027286..1027855 (-) 570 WP_065780654.1 PilZ domain-containing protein -
  FORC71_RS05130 (FORC71_0915) lolC 1028120..1029328 (+) 1209 WP_029786973.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  FORC71_RS05135 (FORC71_0916) lolD 1029321..1030028 (+) 708 WP_005456257.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  FORC71_RS05140 (FORC71_0917) lolE 1030031..1031275 (+) 1245 WP_065780656.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  FORC71_RS05145 (FORC71_0918) - 1031480..1031989 (-) 510 WP_005456245.1 DUF2062 domain-containing protein -
  FORC71_RS05150 (FORC71_0919) comEC 1031998..1034256 (+) 2259 WP_065780657.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FORC71_RS05155 (FORC71_0920) msbA 1034288..1036036 (+) 1749 WP_065780659.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  FORC71_RS05160 (FORC71_0921) lpxK 1036042..1037049 (+) 1008 WP_025508123.1 tetraacyldisaccharide 4'-kinase -
  FORC71_RS05165 (FORC71_0922) - 1037030..1037209 (+) 180 WP_005378451.1 Trm112 family protein -
  FORC71_RS05170 (FORC71_0923) kdsB 1037209..1037964 (+) 756 WP_025508121.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84746.29 Da        Isoelectric Point: 9.3319

>NTDB_id=247612 FORC71_RS05150 WP_065780657.1 1031998..1034256(+) (comEC) [Vibrio parahaemolyticus strain FORC_071]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIITTGSIIKLRRGLISIGVIVGFMVVIVHGNIMEYQRQALFQAGE
NSTIIGRVDSSFTQISHGYEGVIAIKQVNTHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSM
GSGVVARAVVTKDSYWVIRTSSSWREAIIQTVERDIFRLEHFALIKALAFADRTGLTKEDWQSLRDSGLLHLVSISGLHI
GMALTFGLALGGLIRLAMPRYWFLPSVSGLAFAIVYAWLADFSLPTTRAVSVCIIYIALKYWLVHWSPWRVLLLAVALQL
FFQPFASFSLSFWLSYLSVGAVLFAVNTVQDSKEGRLGKLRILLLTQLMLSLLIVPISGYFFSGFSWSSLVYNLVFIPWF
GFVVVPIMFAALIASLLFPMLATVLWCLLDVFLVPLSWSVRYAIGTWQPISTEWTFVIAVVSAVLVLRHVMPRYVWMFVC
VIVVVTGLFPKQDNQTWRIDVLDVGHGLAVLVEKEGRVLLYDTGKAWHNGSIAEQVITPVLHRRGYSSVDTMILSHADND
HAGGRKVIEQYFSPKHKLSSQSFLHYQPCIAAEKWNWQGLNMEVLWPPKPVVRAYNPHSCVISLEDPSTGFKMLFTGDIE
AISEWILLREPEKLRSDVMLVPHHGSKTSSNPKFINVIEPSLAIASTAKLNQWGMPALEVVQAYTDSGVSWLDTGSDGQI
TILLDGNNWRFESKRRETIEPWYRQMLRNRVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=247612 FORC71_RS05150 WP_065780657.1 1031998..1034256(+) (comEC) [Vibrio parahaemolyticus strain FORC_071]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCGTTATTTGTCGCGAGCGTAATTTCGTCTGCATGGTGGCCGACGATGCC
GGATTGGCGTTGGTTGCTGCTGGGAATAATTACCACTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTGTGGGCTTTATGGTTGTCATCGTTCACGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAGGTGAG
AATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCACGGATATGAAGGTGTCATAGCGATAAAACA
AGTGAATACTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCATTCCCACTAGCTGTTAACAGTG
AGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGTTTCGACGCAGAAAAGCAGTCAATG
GGAAGTGGTGTTGTTGCAAGAGCGGTCGTAACTAAAGATTCATACTGGGTCATTCGTACTTCTTCGTCTTGGCGCGAAGC
TATTATTCAAACTGTTGAGCGTGATATTTTTCGCCTTGAGCATTTTGCTCTAATTAAAGCACTGGCTTTTGCTGATCGCA
CTGGGCTTACCAAAGAGGATTGGCAGTCTCTGCGTGACAGCGGGCTACTGCATCTTGTATCAATTTCTGGTCTACACATT
GGGATGGCATTGACGTTTGGGCTCGCCCTTGGTGGGCTTATTCGGCTTGCTATGCCGCGATATTGGTTTCTACCATCAGT
GAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGTTTGTA
TCATCTATATTGCTTTGAAGTATTGGCTTGTTCATTGGAGCCCATGGCGCGTACTGTTACTGGCCGTGGCGTTGCAACTT
TTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTGTTTGCGGTTAA
CACAGTGCAAGACTCGAAGGAAGGTCGTTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATGCTGAGCTTATTGA
TTGTCCCGATCAGTGGCTATTTTTTCTCTGGATTTAGCTGGTCTTCTTTAGTCTACAATTTGGTTTTCATTCCTTGGTTT
GGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATTGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTATGGTG
CTTGCTTGACGTGTTCCTTGTACCACTAAGTTGGTCGGTTCGATATGCCATAGGAACTTGGCAACCCATTAGTACCGAGT
GGACATTTGTTATTGCTGTAGTGAGTGCAGTGCTCGTTTTAAGACATGTTATGCCTCGTTACGTTTGGATGTTTGTCTGT
GTAATTGTTGTGGTGACAGGGTTGTTTCCTAAGCAAGATAACCAAACTTGGCGTATTGATGTGCTTGATGTCGGGCATGG
GTTGGCGGTGCTGGTCGAAAAAGAGGGGAGAGTTTTACTCTATGATACGGGCAAGGCTTGGCACAACGGCAGTATAGCTG
AGCAAGTGATTACGCCAGTACTGCACCGCAGAGGCTACTCAAGTGTCGATACGATGATTTTAAGTCATGCCGATAATGAC
CATGCTGGCGGCCGAAAAGTGATAGAGCAGTACTTTTCACCTAAACACAAACTAAGCAGCCAGAGCTTTTTACATTATCA
GCCTTGTATTGCTGCTGAGAAATGGAACTGGCAAGGGTTGAACATGGAGGTACTTTGGCCTCCTAAACCTGTTGTACGTG
CATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGACCCTAGTACAGGTTTTAAAATGTTGTTTACTGGTGATATCGAA
GCCATCAGCGAATGGATACTGCTTCGAGAGCCAGAAAAGCTGCGCAGTGATGTAATGCTAGTGCCGCATCATGGAAGCAA
AACCTCTTCTAACCCTAAGTTTATCAATGTTATTGAGCCTAGCTTGGCTATTGCTTCAACGGCAAAACTAAACCAGTGGG
GAATGCCTGCACTTGAAGTCGTTCAGGCCTATACCGATAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCCAAATA
ACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCGTGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

98.005

100

0.98
  comEC Vibrio campbellii strain DS40M4

66.489

100

0.665
  comEC Vibrio cholerae strain A1552

40.77

100

0.408

Multiple sequence alignment