Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AOY66_RS16295 Genome accession   NZ_CP028761
Coordinates   3408478..3409215 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain A13     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3403478..3414215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY66_RS16280 (AOY66_17215) clpC 3403932..3406505 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AOY66_RS16285 (AOY66_17220) yfiH 3406635..3407366 (-) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  AOY66_RS16290 (AOY66_17225) rluD 3407363..3408343 (-) 981 WP_000079118.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AOY66_RS16295 (AOY66_17230) comL 3408478..3409215 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AOY66_RS16300 (AOY66_17240) raiA 3409485..3409826 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AOY66_RS16305 (AOY66_17245) pheL 3409930..3409977 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AOY66_RS16310 (AOY66_17250) pheA 3410076..3411236 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  AOY66_RS16315 (AOY66_17255) tyrA 3411279..3412400 (-) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AOY66_RS16320 (AOY66_17260) aroF 3412411..3413481 (-) 1071 WP_001168027.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AOY66_RS16325 (AOY66_17265) yfiL 3413691..3414056 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=247607 AOY66_RS16295 WP_000197686.1 3408478..3409215(+) (comL) [Escherichia coli strain A13]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=247607 AOY66_RS16295 WP_000197686.1 3408478..3409215(+) (comL) [Escherichia coli strain A13]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376