Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   COP00_RS07370 Genome accession   NZ_CP023481
Coordinates   1364596..1366923 (-) Length   775 a.a.
NCBI ID   WP_048355471.1    Uniprot ID   A0A0J6H689
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1359596..1371923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS07340 (COP00_07340) - 1359827..1360150 (-) 324 WP_048406543.1 YqxA family protein -
  COP00_RS07345 (COP00_07345) spoIIP 1360166..1361368 (-) 1203 WP_048355475.1 stage II sporulation protein P -
  COP00_RS07350 (COP00_07350) gpr 1361470..1362576 (-) 1107 WP_048355474.1 GPR endopeptidase -
  COP00_RS07355 (COP00_07355) rpsT 1362781..1363047 (+) 267 WP_048355473.1 30S ribosomal protein S20 -
  COP00_RS07360 (COP00_07360) holA 1363103..1364143 (-) 1041 WP_048355500.1 DNA polymerase III subunit delta -
  COP00_RS07365 (COP00_07365) - 1364376..1364507 (+) 132 WP_048355472.1 YqzM family protein -
  COP00_RS07370 (COP00_07370) comEC 1364596..1366923 (-) 2328 WP_048355471.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  COP00_RS07375 (COP00_07375) - 1366930..1367499 (-) 570 WP_048355470.1 ComE operon protein 2 -
  COP00_RS07380 (COP00_07380) comEA 1367568..1368164 (-) 597 WP_048355469.1 helix-hairpin-helix domain-containing protein Machinery gene
  COP00_RS07385 (COP00_07385) comER 1368249..1369070 (+) 822 WP_048355468.1 late competence protein ComER -
  COP00_RS07390 (COP00_07390) - 1369138..1369893 (-) 756 WP_048355467.1 class I SAM-dependent DNA methyltransferase -
  COP00_RS07395 (COP00_07395) rsfS 1369893..1370246 (-) 354 WP_048355466.1 ribosome silencing factor -
  COP00_RS07400 (COP00_07400) yqeK 1370260..1370823 (-) 564 WP_048355465.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  COP00_RS07405 (COP00_07405) - 1370813..1371382 (-) 570 WP_048355464.1 nicotinate-nucleotide adenylyltransferase -
  COP00_RS07410 (COP00_07410) yhbY 1371401..1371691 (-) 291 WP_048355463.1 ribosome assembly RNA-binding protein YhbY -

Sequence

Protein


Download         Length: 775 a.a.        Molecular weight: 85326.82 Da        Isoelectric Point: 8.2124

>NTDB_id=247497 COP00_RS07370 WP_048355471.1 1364596..1366923(-) (comEC) [Bacillus glycinifermentans strain KBN06P03352]
MGTYRILPCGAISAAAGIASAQSSSLLPLAAFLCLFFILCLIKKQFLLFIICTLVCSFYFSYFLIIDRSNTSSYREGAYH
AAVSIRDIPRIDGDRLAFTAETAEGEAVKAGYIIKSPQEKAALSALDPGSTCFMKGELKTPKKETVPGTFDYKEYLRQQG
IHWNFTVQSIESCKSGGGLMPFLLKIRKAGLAFIEKNVPESSAGIVQALTFGDRFLIEQEVLDGYQTLGIIHLLAISGLH
IGIISAAFFYILLRIGMTRECAKWSLIIMLPVAAVLTGGSPSVLRAAFMTDIYLVSSLCKNRLRSAQVISIAFLVLLLYS
PYMLFQAGFQLSFAASFVFILSKKILVKSKRQAARLLLSSFAAQLGSLPILLFHFQEFSFLSVLMNLFFIPFYVLAVMPL
SFAGLSALWIAPPLGELAIGVLDALLRWSHVVVKTVSSVDFFTFSAVQPDVLQLLFYLAAICFLFISMEKEATFQRLIIP
VCLLACAFLFHAAAPYLTSEGEVTMLDVGQGDSIYVSAPGQNGHVLIDTGGIVSFNTEKWRKRKNEFSLGDRVLMPFLAS
KGVKKLDALILTHADQDHIGEAEVLIRKHKVKQLIVPIGYAAEPADEKLLRFAAERGVNVRTAKRGDRLKIGDLVFDVLS
PETADGSSKNNGSLVLWMEAGGFSWLLTGDLEKQGEREIIEAYPDLKADILKVGHHGSKGSTGEELIKQIGPEIALISAG
ENNRYGHPHEEVLEVLKRHQVKVFRTDRDGAVQYLFKRGDGTFLLHPPYDTVYSP

Nucleotide


Download         Length: 2328 bp        

>NTDB_id=247497 COP00_RS07370 WP_048355471.1 1364596..1366923(-) (comEC) [Bacillus glycinifermentans strain KBN06P03352]
ATGGGCACCTACCGCATCCTTCCTTGCGGAGCAATTTCGGCGGCGGCCGGAATTGCTTCCGCTCAAAGCTCCTCTCTTCT
CCCTTTAGCCGCCTTTTTATGTCTGTTTTTCATCCTCTGTCTGATTAAAAAACAATTTCTCCTCTTTATCATTTGTACAC
TTGTTTGCAGTTTTTATTTTAGTTATTTTCTCATCATTGACAGATCGAATACGTCGAGTTACCGGGAAGGCGCATACCAT
GCGGCCGTATCGATTCGCGATATTCCCAGAATCGACGGGGACCGCCTCGCTTTCACAGCCGAAACGGCTGAAGGAGAGGC
GGTGAAAGCGGGCTACATCATAAAGTCCCCACAGGAAAAAGCGGCGCTGTCAGCGCTCGATCCGGGGAGTACGTGTTTTA
TGAAAGGCGAATTAAAAACGCCTAAAAAAGAGACTGTGCCCGGGACGTTTGACTATAAAGAATATTTACGCCAGCAGGGG
ATCCACTGGAATTTTACGGTTCAGTCGATCGAAAGCTGCAAGTCCGGAGGCGGCCTGATGCCGTTTTTGCTGAAAATCCG
CAAGGCCGGACTTGCTTTTATAGAAAAAAATGTACCCGAATCATCCGCTGGTATTGTGCAGGCGCTGACGTTCGGCGACA
GGTTTCTGATCGAGCAAGAAGTGCTTGACGGATATCAAACGCTCGGGATCATCCACCTTTTGGCGATTTCCGGTCTTCAC
ATTGGGATTATTTCAGCAGCTTTTTTCTACATTTTGCTGCGGATCGGCATGACGAGAGAATGTGCAAAATGGTCGTTGAT
CATCATGCTTCCCGTTGCCGCCGTGTTAACAGGAGGGTCACCCTCAGTGCTGAGGGCGGCATTCATGACTGACATTTACC
TCGTCTCTTCATTGTGCAAGAATCGTCTAAGGAGCGCCCAGGTGATCAGCATCGCCTTTCTCGTCCTTTTGTTATACAGC
CCTTACATGCTGTTTCAGGCCGGTTTTCAGCTTTCCTTTGCAGCGTCATTCGTCTTTATTCTCTCGAAGAAAATACTAGT
AAAGTCTAAACGTCAAGCCGCCCGACTATTGCTTTCCTCCTTTGCGGCCCAGCTCGGTTCTCTTCCGATTCTTCTCTTTC
ACTTTCAAGAGTTTTCATTTCTCAGCGTGCTGATGAATCTATTTTTTATACCGTTTTATGTGTTGGCTGTTATGCCGCTG
TCATTTGCCGGTTTATCGGCATTATGGATTGCGCCCCCGCTTGGGGAACTTGCAATTGGTGTACTCGATGCGCTGCTCCG
GTGGAGCCATGTTGTGGTTAAAACTGTTTCTTCCGTTGATTTCTTCACATTTTCGGCAGTCCAGCCGGATGTCCTCCAGT
TGCTTTTTTACCTTGCTGCAATATGTTTCCTTTTCATCTCTATGGAAAAAGAGGCAACTTTTCAAAGGCTCATCATCCCG
GTTTGTCTGCTTGCCTGCGCTTTTTTGTTTCACGCCGCCGCGCCGTATCTCACCAGTGAAGGGGAAGTTACGATGCTGGA
TGTCGGGCAGGGTGACAGCATATATGTCAGCGCGCCCGGACAAAACGGGCATGTTTTGATCGATACAGGGGGAATCGTTT
CTTTCAACACGGAGAAATGGCGAAAAAGGAAAAATGAGTTTTCCTTGGGAGATCGAGTGTTAATGCCATTCCTCGCTTCA
AAAGGGGTTAAAAAACTCGATGCATTAATTCTGACTCATGCTGATCAGGATCATATTGGAGAAGCTGAAGTTTTGATCAG
GAAGCATAAAGTGAAACAACTGATTGTGCCGATCGGTTATGCTGCTGAGCCGGCGGATGAAAAGCTCCTCCGCTTCGCTG
CAGAAAGGGGCGTGAATGTGAGAACAGCCAAAAGGGGAGACCGCTTGAAGATCGGTGATCTGGTGTTTGACGTTCTTTCG
CCGGAGACAGCGGACGGCAGCAGCAAAAATAACGGTTCCCTCGTTTTATGGATGGAGGCGGGCGGCTTCAGCTGGCTGTT
AACCGGCGACTTGGAAAAGCAGGGCGAGCGGGAGATCATCGAAGCCTATCCGGATCTGAAAGCCGATATCCTGAAAGTCG
GCCATCATGGCAGCAAAGGGTCGACAGGGGAGGAATTGATCAAACAAATCGGGCCGGAAATCGCGCTTATCTCCGCTGGG
GAAAATAATCGCTACGGCCATCCGCATGAGGAGGTGCTGGAGGTTTTAAAGCGTCATCAGGTCAAGGTTTTCAGGACAGA
CAGGGACGGGGCGGTTCAATACCTATTTAAAAGAGGGGACGGAACATTTTTGCTTCATCCTCCATATGATACAGTATATT
CCCCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-469)

Domain of unknown function (DUF4131) (DUF4131)

(24-171)

Metallo-beta-lactamase superfamily (Lactamase_B)

(508-720)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6H689

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

49.74

99.097

0.493

Multiple sequence alignment