Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   COP00_RS07380 Genome accession   NZ_CP023481
Coordinates   1367568..1368164 (-) Length   198 a.a.
NCBI ID   WP_048355469.1    Uniprot ID   A0A0T6BU94
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1362568..1373164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS07355 (COP00_07355) rpsT 1362781..1363047 (+) 267 WP_048355473.1 30S ribosomal protein S20 -
  COP00_RS07360 (COP00_07360) holA 1363103..1364143 (-) 1041 WP_048355500.1 DNA polymerase III subunit delta -
  COP00_RS07365 (COP00_07365) - 1364376..1364507 (+) 132 WP_048355472.1 YqzM family protein -
  COP00_RS07370 (COP00_07370) comEC 1364596..1366923 (-) 2328 WP_048355471.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  COP00_RS07375 (COP00_07375) - 1366930..1367499 (-) 570 WP_048355470.1 ComE operon protein 2 -
  COP00_RS07380 (COP00_07380) comEA 1367568..1368164 (-) 597 WP_048355469.1 helix-hairpin-helix domain-containing protein Machinery gene
  COP00_RS07385 (COP00_07385) comER 1368249..1369070 (+) 822 WP_048355468.1 late competence protein ComER -
  COP00_RS07390 (COP00_07390) - 1369138..1369893 (-) 756 WP_048355467.1 class I SAM-dependent DNA methyltransferase -
  COP00_RS07395 (COP00_07395) rsfS 1369893..1370246 (-) 354 WP_048355466.1 ribosome silencing factor -
  COP00_RS07400 (COP00_07400) yqeK 1370260..1370823 (-) 564 WP_048355465.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  COP00_RS07405 (COP00_07405) - 1370813..1371382 (-) 570 WP_048355464.1 nicotinate-nucleotide adenylyltransferase -
  COP00_RS07410 (COP00_07410) yhbY 1371401..1371691 (-) 291 WP_048355463.1 ribosome assembly RNA-binding protein YhbY -
  COP00_RS07415 (COP00_07415) aroE 1371685..1372518 (-) 834 WP_048355462.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 20872.73 Da        Isoelectric Point: 5.4112

>NTDB_id=247499 COP00_RS07380 WP_048355469.1 1367568..1368164(-) (comEA) [Bacillus glycinifermentans strain KBN06P03352]
MNMLKRYKWPAAGGMLAALFIIAVAVMSNIRGEPAGSNAVPAEAAASSSGRAAKKETKENDEIVIDLKGAVKKPGVYEMR
AGERVHHLLKKAGGTVKNAEEKQVNLAAVLQDGMVIYIPYEGEEGVQTGAGGEAETVNINTASTEELQAIPGVGPSKAEA
ITAYREENGPFQTVEDITNVSGIGEKTFEKIKSSISVK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=247499 COP00_RS07380 WP_048355469.1 1367568..1368164(-) (comEA) [Bacillus glycinifermentans strain KBN06P03352]
ATGAACATGCTGAAGCGCTACAAATGGCCCGCGGCTGGAGGAATGCTTGCAGCACTTTTTATCATCGCGGTCGCTGTGAT
GTCAAACATACGCGGCGAACCAGCCGGGAGCAATGCTGTGCCGGCAGAGGCCGCCGCTTCTTCATCCGGCCGTGCTGCCA
AAAAGGAAACGAAAGAAAACGACGAAATTGTGATCGATCTGAAGGGCGCCGTCAAAAAGCCCGGCGTTTATGAGATGAGG
GCGGGCGAAAGGGTGCATCATTTGCTGAAAAAGGCGGGAGGTACCGTGAAAAATGCAGAAGAGAAACAAGTCAACCTGGC
CGCTGTCCTTCAGGATGGGATGGTGATTTATATTCCGTATGAAGGCGAGGAAGGCGTTCAAACCGGTGCGGGAGGCGAAG
CAGAAACGGTTAACATTAATACCGCTTCAACAGAAGAGCTTCAGGCGATCCCGGGCGTCGGACCTTCAAAAGCGGAAGCG
ATCACAGCATACCGTGAGGAGAACGGTCCGTTTCAAACGGTGGAAGACATTACAAACGTTTCGGGCATCGGAGAAAAAAC
ATTTGAAAAAATAAAATCGTCAATATCGGTGAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(134-195)

SLBB domain (SLBB)

(65-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6BU94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

53.883

100

0.561

Multiple sequence alignment