Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   COP00_RS06800 Genome accession   NZ_CP023481
Coordinates   1270528..1270821 (-) Length   97 a.a.
NCBI ID   WP_046129972.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1265528..1275821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS06755 (COP00_06755) tasA 1265876..1266670 (-) 795 WP_048356541.1 biofilm matrix protein TasA -
  COP00_RS06760 (COP00_06760) sipW 1266739..1267320 (-) 582 WP_046129965.1 signal peptidase I SipW -
  COP00_RS06765 (COP00_06765) tapA 1267317..1268042 (-) 726 WP_046129966.1 amyloid fiber anchoring/assembly protein TapA -
  COP00_RS06770 (COP00_06770) - 1268305..1268628 (+) 324 WP_046129967.1 DUF3889 domain-containing protein -
  COP00_RS06775 (COP00_06775) - 1268713..1268895 (-) 183 WP_048356540.1 YqzE family protein -
  COP00_RS06780 (COP00_06780) comGG 1268977..1269342 (-) 366 WP_048356539.1 competence type IV pilus minor pilin ComGG -
  COP00_RS06785 (COP00_06785) comGF 1269354..1269839 (-) 486 WP_082634619.1 competence type IV pilus minor pilin ComGF -
  COP00_RS06790 (COP00_06790) comGE 1269754..1270101 (-) 348 WP_048356538.1 competence type IV pilus minor pilin ComGE -
  COP00_RS06795 (COP00_06795) comGD 1270085..1270528 (-) 444 WP_046129971.1 competence type IV pilus minor pilin ComGD -
  COP00_RS06800 (COP00_06800) comGC 1270528..1270821 (-) 294 WP_046129972.1 competence type IV pilus major pilin ComGC Machinery gene
  COP00_RS06805 (COP00_06805) comGB 1270836..1271873 (-) 1038 WP_046129973.1 competence type IV pilus assembly protein ComGB Machinery gene
  COP00_RS06810 (COP00_06810) comGA 1271860..1272927 (-) 1068 WP_046129974.1 competence type IV pilus ATPase ComGA Machinery gene
  COP00_RS06815 (COP00_06815) - 1273084..1273923 (-) 840 WP_048356172.1 STAS domain-containing protein -
  COP00_RS06825 (COP00_06825) - 1274136..1274516 (-) 381 WP_046129976.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  COP00_RS06830 (COP00_06830) - 1274720..1274965 (+) 246 WP_046129977.1 DUF2626 domain-containing protein -
  COP00_RS06835 (COP00_06835) - 1275014..1275652 (-) 639 WP_096891856.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10641.49 Da        Isoelectric Point: 7.8560

>NTDB_id=247493 COP00_RS06800 WP_046129972.1 1270528..1270821(-) (comGC) [Bacillus glycinifermentans strain KBN06P03352]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQNIQKKGCEGLINMVQAQITAYQMDHDGKTPSLGELESEGYIKKNLA
CPNGKSIVISNGKAQTQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=247493 COP00_RS06800 WP_046129972.1 1270528..1270821(-) (comGC) [Bacillus glycinifermentans strain KBN06P03352]
TTGAATGAAAAGGGATTTACGCTGATAGAAATGCTGGTCGTTATGCTTGTCATCTCAATTCTGCTCTTAATTACGATCCC
GAATGTGACGAAGCATAATCAAAACATTCAAAAGAAAGGCTGTGAGGGATTGATCAATATGGTTCAGGCCCAAATTACCG
CGTATCAGATGGATCACGACGGGAAAACGCCAAGTCTTGGAGAGCTTGAATCAGAGGGATATATCAAGAAAAATTTGGCG
TGTCCTAATGGAAAATCGATCGTGATTTCAAATGGCAAGGCACAAACACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

69.072

100

0.691
  comGC Staphylococcus aureus MW2

44.565

94.845

0.423
  comGC Staphylococcus aureus N315

44.565

94.845

0.423

Multiple sequence alignment