Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   COP00_RS06810 Genome accession   NZ_CP023481
Coordinates   1271860..1272927 (-) Length   355 a.a.
NCBI ID   WP_046129974.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1266860..1277927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS06765 (COP00_06765) tapA 1267317..1268042 (-) 726 WP_046129966.1 amyloid fiber anchoring/assembly protein TapA -
  COP00_RS06770 (COP00_06770) - 1268305..1268628 (+) 324 WP_046129967.1 DUF3889 domain-containing protein -
  COP00_RS06775 (COP00_06775) - 1268713..1268895 (-) 183 WP_048356540.1 YqzE family protein -
  COP00_RS06780 (COP00_06780) comGG 1268977..1269342 (-) 366 WP_048356539.1 competence type IV pilus minor pilin ComGG -
  COP00_RS06785 (COP00_06785) comGF 1269354..1269839 (-) 486 WP_082634619.1 competence type IV pilus minor pilin ComGF -
  COP00_RS06790 (COP00_06790) comGE 1269754..1270101 (-) 348 WP_048356538.1 competence type IV pilus minor pilin ComGE -
  COP00_RS06795 (COP00_06795) comGD 1270085..1270528 (-) 444 WP_046129971.1 competence type IV pilus minor pilin ComGD -
  COP00_RS06800 (COP00_06800) comGC 1270528..1270821 (-) 294 WP_046129972.1 competence type IV pilus major pilin ComGC Machinery gene
  COP00_RS06805 (COP00_06805) comGB 1270836..1271873 (-) 1038 WP_046129973.1 competence type IV pilus assembly protein ComGB Machinery gene
  COP00_RS06810 (COP00_06810) comGA 1271860..1272927 (-) 1068 WP_046129974.1 competence type IV pilus ATPase ComGA Machinery gene
  COP00_RS06815 (COP00_06815) - 1273084..1273923 (-) 840 WP_048356172.1 STAS domain-containing protein -
  COP00_RS06825 (COP00_06825) - 1274136..1274516 (-) 381 WP_046129976.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  COP00_RS06830 (COP00_06830) - 1274720..1274965 (+) 246 WP_046129977.1 DUF2626 domain-containing protein -
  COP00_RS06835 (COP00_06835) - 1275014..1275652 (-) 639 WP_096891856.1 MBL fold metallo-hydrolase -
  COP00_RS06840 (COP00_06840) - 1275793..1275966 (+) 174 WP_046129979.1 DUF2759 domain-containing protein -
  COP00_RS06845 (COP00_06845) - 1276037..1276351 (-) 315 WP_046129980.1 MTH1187 family thiamine-binding protein -
  COP00_RS06850 (COP00_06850) - 1276368..1277471 (-) 1104 WP_046129981.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39803.27 Da        Isoelectric Point: 9.2825

>NTDB_id=247495 COP00_RS06810 WP_046129974.1 1271860..1272927(-) (comGA) [Bacillus glycinifermentans strain KBN06P03352]
MYAIESLSGKLIEEACAMRASDIHIVPGEKEAVIRFRIDDELFQKGRLTRMECSRLISHFKFLSSMDIGERRQPQSGALT
IKVNNQPVHLRMSTLPTIYDESLVIRVLPQASAPPLRSLSLFPNATAKLLSFLKHSHGLLIFTGPTGSGKTTTLYSLIEY
AKQHFNRNIITLEDPVESRSEHVLQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAKIAVRAALTGHLVLSSMH
AKNAKGAIYRLLEFGIHMTEIEQTLVAISAQRLVNLVCPLCGERCSLYCRMSGNGRRVSVFELLYGKSLNLCIKEAKGAY
VNSRFETLRKLIRKGIALGYLPEETYNRWVHHETE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=247495 COP00_RS06810 WP_046129974.1 1271860..1272927(-) (comGA) [Bacillus glycinifermentans strain KBN06P03352]
GTGTACGCGATTGAATCATTAAGCGGGAAATTGATCGAAGAGGCGTGTGCGATGAGAGCTTCTGATATTCATATCGTTCC
GGGGGAAAAAGAGGCGGTTATCCGCTTTAGAATTGATGATGAACTATTTCAAAAGGGCAGACTGACGAGAATGGAGTGCT
CAAGGCTCATTTCTCATTTTAAATTTCTTTCTTCAATGGATATCGGGGAGCGAAGGCAGCCGCAAAGCGGTGCTTTAACC
ATTAAAGTGAACAATCAGCCCGTTCACTTGAGAATGTCGACTTTGCCTACCATATACGACGAAAGCCTGGTTATTCGCGT
ATTGCCGCAGGCAAGCGCCCCGCCGCTCAGAAGCCTGTCTTTGTTTCCAAACGCAACGGCAAAGCTGCTGTCTTTTCTGA
AACATTCCCACGGTCTGCTGATCTTCACAGGTCCAACCGGTTCGGGAAAAACGACGACCCTGTACTCGCTGATCGAGTAT
GCCAAACAGCATTTCAACCGCAATATTATCACGCTGGAGGACCCGGTTGAATCCAGAAGCGAGCATGTTCTTCAAGTACA
GGTGAATGAAAAAGCGGGCATGACGTATTCAGCAGGTTTAAAGGCTGTTCTCCGTCATGATCCCGACATGATCATCCTTG
GAGAAATCCGCGATGCCGAAACAGCCAAAATCGCCGTCAGAGCTGCGCTGACGGGACATCTTGTATTATCTAGCATGCAT
GCGAAAAACGCAAAAGGAGCTATATACCGGCTGCTTGAGTTTGGCATTCATATGACCGAAATTGAGCAGACGCTTGTCGC
TATAAGCGCACAGCGTCTCGTCAACCTTGTTTGTCCGTTATGCGGGGAGCGGTGTTCTTTGTATTGCAGGATGTCGGGGA
ACGGAAGAAGAGTGAGCGTTTTTGAGCTTTTGTACGGGAAGAGTCTGAACCTGTGCATAAAAGAGGCAAAAGGCGCATAC
GTGAACAGCCGTTTTGAAACGCTGAGAAAATTGATTCGAAAAGGGATAGCGCTCGGCTATCTCCCGGAGGAAACTTATAA
CAGATGGGTGCATCATGAGACTGAATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

69.944

100

0.701
  pilB Glaesserella parasuis strain SC1401

39.437

100

0.394

Multiple sequence alignment