Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   FORC72_RS02015 Genome accession   NZ_CP023472
Coordinates   389129..389773 (-) Length   214 a.a.
NCBI ID   WP_025498808.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_072     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 384129..394773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC72_RS02005 (FORC72_0311) uvrA 385039..387861 (-) 2823 WP_025522377.1 excinuclease ABC subunit UvrA -
  FORC72_RS02010 (FORC72_0312) galU 387999..388871 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FORC72_RS02015 (FORC72_0313) qstR 389129..389773 (-) 645 WP_025498808.1 LuxR C-terminal-related transcriptional regulator Regulator
  FORC72_RS02020 (FORC72_0315) ssb 390052..390582 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  FORC72_RS02025 (FORC72_0316) csrD 390823..392832 (+) 2010 WP_020835330.1 RNase E specificity factor CsrD -
  FORC72_RS02030 (FORC72_0317) - 392844..394289 (+) 1446 WP_065766435.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24368.17 Da        Isoelectric Point: 8.7760

>NTDB_id=247327 FORC72_RS02015 WP_025498808.1 389129..389773(-) (qstR) [Vibrio parahaemolyticus strain FORC_072]
MRKSAYARKLFLISIEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=247327 FORC72_RS02015 WP_025498808.1 389129..389773(-) (qstR) [Vibrio parahaemolyticus strain FORC_072]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATAGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACCCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCTGGAGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

99.533

100

0.995
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment