Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CNN82_RS04500 Genome accession   NZ_CP023466
Coordinates   953324..954670 (-) Length   448 a.a.
NCBI ID   WP_096479529.1    Uniprot ID   A0AB33E5Z4
Organism   Pseudomonas frederiksbergensis strain KNU-15     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 948324..959670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNN82_RS04485 (CNN82_04485) - 948610..951732 (+) 3123 WP_096479527.1 PilC/PilY family type IV pilus protein -
  CNN82_RS04490 (CNN82_04490) - 951746..952147 (+) 402 WP_019581258.1 type IV pilin protein -
  CNN82_RS04495 (CNN82_04495) thiO 952204..953304 (+) 1101 WP_096479528.1 glycine oxidase ThiO -
  CNN82_RS04500 (CNN82_04500) pilR 953324..954670 (-) 1347 WP_096479529.1 sigma-54 dependent transcriptional regulator Regulator
  CNN82_RS04505 (CNN82_04505) pilS 954667..956256 (-) 1590 WP_096479530.1 ATP-binding protein Regulator
  CNN82_RS04510 (CNN82_04510) - 956246..956479 (-) 234 WP_019581254.1 PP0621 family protein -
  CNN82_RS04515 (CNN82_04515) - 956616..957632 (-) 1017 WP_018925899.1 outer membrane protein assembly factor BamD -
  CNN82_RS04520 (CNN82_04520) rluD 957784..958746 (+) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CNN82_RS04525 (CNN82_04525) pgeF 958743..959465 (+) 723 WP_028938883.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49846.23 Da        Isoelectric Point: 6.8385

>NTDB_id=247258 CNN82_RS04500 WP_096479529.1 953324..954670(-) (pilR) [Pseudomonas frederiksbergensis strain KNU-15]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLAEAQALLAQDTFDLCLTDMRLPDGTGLALVQHIQQRYAQVP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVISALSLPAPGGTSSGIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHDQGPRASRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRSIGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIELLA
NNMLKRLAASTGQPPAKLHPQALEALKNYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCNPDGGVPDLTQIDN
LEAYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=247258 CNN82_RS04500 WP_096479529.1 953324..954670(-) (pilR) [Pseudomonas frederiksbergensis strain KNU-15]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAACCTCGCAGAAGCGCAGGCGCTGCTGGCACAGGATACGTTCGACCTGT
GCCTGACTGACATGCGCCTGCCTGACGGCACCGGACTGGCGCTGGTACAACACATCCAGCAGCGCTATGCGCAAGTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAGACCGCTATAAATGCCCTCAAGGCCGGCGCCTTCGACTTTCTGACCAA
ACCGGTCGACCTCACCCGCCTGCGCGAACTGGTCATCAGCGCCCTGAGCTTGCCAGCGCCAGGCGGCACCAGCAGCGGCA
TCGACCGTCGGCTGCTGGGCGACTCGCTGCCAATGCGCAACCTGCGCAAACAAATCGACAAACTGGCCCGCAGCCAAGCC
CCGGTCTACATCAGTGGCGAGTCCGGTAGCGGCAAGGAACTGGTCGCTCGACTTATCCACGACCAAGGCCCGCGCGCCAG
CCGACCGTTCGTCCCGGTGAACTGTGGGGCAATCCCGTCGGAATTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCA
GTTTCAGCGGCGCCATCGAAGACAAGCCTGGGCTGTTCCAGGCTGCCCATGGCGGTACTTTGTTCCTCGACGAAGTGGCT
GACCTACCGCTGGCAATGCAGGTCAAACTGCTGCGGGCCATACAGGAGAAAGCCGTTCGCAGCATCGGTGGCCAGCAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCCACTCACAAAGACCTCGATGCCGAAGTCGCCGCCGAACGCTTTCGCCAGG
ACCTGTACTACCGCCTGAACGTGATCGAGCTGCGAGTACCGTCCTTGCGCGAACGCCGCGACGACATTGAGCTTCTGGCC
AACAATATGCTCAAGCGACTGGCGGCCAGCACTGGCCAGCCCCCCGCAAAACTCCACCCACAAGCCCTCGAAGCGCTGAA
AAACTATCGCTTTCCTGGAAACGTGCGGGAATTGGAGAACATGCTCGAACGGGCTCACACCTTGTGCGAGAACAAACAGA
TCGAAGCCAGCGACCTGCGCCTGGCGGAAGGCAACTGCAATCCGGACGGCGGCGTGCCAGACCTGACACAGATCGACAAT
CTGGAAGCCTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCGGC
GGCCCAGCGATTGAATCTGTCATTTCGGTCGATGCGTTACAGGCTGAAGAAATTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.007

98.884

0.781
  pilR Acinetobacter baumannii strain A118

49.237

100

0.504

Multiple sequence alignment