Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CNN82_RS04505 Genome accession   NZ_CP023466
Coordinates   954667..956256 (-) Length   529 a.a.
NCBI ID   WP_096479530.1    Uniprot ID   A0AB33E5L7
Organism   Pseudomonas frederiksbergensis strain KNU-15     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 949667..961256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNN82_RS04490 (CNN82_04490) - 951746..952147 (+) 402 WP_019581258.1 type IV pilin protein -
  CNN82_RS04495 (CNN82_04495) thiO 952204..953304 (+) 1101 WP_096479528.1 glycine oxidase ThiO -
  CNN82_RS04500 (CNN82_04500) pilR 953324..954670 (-) 1347 WP_096479529.1 sigma-54 dependent transcriptional regulator Regulator
  CNN82_RS04505 (CNN82_04505) pilS 954667..956256 (-) 1590 WP_096479530.1 ATP-binding protein Regulator
  CNN82_RS04510 (CNN82_04510) - 956246..956479 (-) 234 WP_019581254.1 PP0621 family protein -
  CNN82_RS04515 (CNN82_04515) - 956616..957632 (-) 1017 WP_018925899.1 outer membrane protein assembly factor BamD -
  CNN82_RS04520 (CNN82_04520) rluD 957784..958746 (+) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CNN82_RS04525 (CNN82_04525) pgeF 958743..959465 (+) 723 WP_028938883.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58763.70 Da        Isoelectric Point: 7.1983

>NTDB_id=247259 CNN82_RS04505 WP_096479530.1 954667..956256(-) (pilS) [Pseudomonas frederiksbergensis strain KNU-15]
MIAETPSPSNKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLKFANDDLLRNGSWLYLVLNILLVVFLGNTQRPAQLF
GLALVDVLLLCGLFYAAGGMASAIGNLLIVSVAISNTLLRGRIGLLIAAVGALGIVGFSFILSFNHPASPSDYLQIGTLG
ALCFAAALLVQGLTRRLEVSETLAEQRASEVLGLEALNALILQRMRTGILVLDNQRRVQLANHSALTLLGQEKLDGQLID
DYSMPLVERLQLWLNNPTLRPQSLQIASNGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGADRRLTQIIQNHSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETREGSKEH
QQIHLRIGLGNFKTLMDPNQLTQILDNLLRNAWRHSALKHDQAQAWLELFIDPDSQLPTLEVLDDGPGVEPEQRTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=247259 CNN82_RS04505 WP_096479530.1 954667..956256(-) (pilS) [Pseudomonas frederiksbergensis strain KNU-15]
GTGATCGCTGAGACGCCCAGCCCAAGCAACAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTCTACCGCTTAAGCGT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGAAGTTCGCCAATGACGACCTGCTGCGCA
ACGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTCTTTCTGGGGAACACCCAGCGCCCCGCGCAGCTGTTC
GGCCTGGCGCTGGTCGATGTCCTGCTGCTGTGCGGCTTGTTCTATGCCGCAGGCGGCATGGCCAGCGCCATCGGCAATTT
GCTGATCGTCTCAGTGGCCATCAGCAATACCTTGCTGCGCGGGCGTATCGGTCTGCTGATCGCAGCGGTCGGTGCCCTTG
GCATCGTGGGTTTTAGCTTCATCCTGAGCTTCAACCACCCCGCCAGCCCCAGTGATTACCTGCAAATCGGCACCCTCGGC
GCCCTGTGTTTTGCCGCGGCGCTGCTGGTGCAGGGCTTGACCCGACGACTGGAGGTCAGTGAAACCCTGGCCGAACAGCG
GGCCAGTGAAGTGCTCGGTCTCGAAGCCCTCAACGCACTGATCCTGCAACGCATGCGCACGGGCATTCTGGTGCTCGACA
ACCAGCGGCGGGTGCAACTGGCCAATCACAGCGCCTTGACCTTGCTGGGGCAGGAAAAACTGGACGGCCAGTTGATCGAC
GATTACTCGATGCCGTTGGTCGAGCGGCTCCAACTGTGGCTCAACAATCCAACATTGCGCCCGCAAAGCCTGCAGATCGC
CAGCAACGGCCTCGAGCTGCAACCAAGCTTCATTGCCCTGGACCAAAGCCCGCACCACCAGACGCTGGTTTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCCCAACAACTGAAACTCGCCGCCCTAGGTCGCCTGACCGCCGGGATTGCCCATGAG
ATCCGCAATCCACTGGGCGCCATTAGTCATGCCGCGCAGTTACTGCAGGAATCCGAGGAACTGAACGGTGCGGACCGGCG
TCTGACGCAGATTATTCAAAACCACTCTCAGCGCATGAATCGGGTAATCGAAAACGTCCTGCAACTATCCCGTCGTCAGC
AAACCGTGCCGCAACGGCTCGATTTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGCGAGGGCTCGAAAGAACAT
CAGCAGATTCACCTGCGCATCGGCTTGGGAAACTTCAAAACCCTGATGGATCCGAATCAGCTGACCCAGATTCTCGATAA
CCTGTTGCGCAATGCCTGGCGCCATAGCGCCCTCAAGCATGATCAGGCACAGGCCTGGCTTGAGTTGTTTATCGACCCGG
ACAGCCAGTTGCCGACCCTTGAAGTGCTCGATGATGGCCCCGGCGTCGAGCCGGAGCAGCGCACGCACTTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGTACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCCCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.245

100

0.594

Multiple sequence alignment