Detailed information NTG0247195

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: COO52_RS06740
• Genome accession: NZ_CP023448
• Coordinates: 1353365..1354501 (-)
• Length: 378 a.a.
• NCBI ID: WP_096479146.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HPJP26
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1348365..1359501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
COO52_RS06720	hypE	1348549..1349547 (+)	999	WP_096479143.1	hydrogenase expression/formation protein HypE	-
COO52_RS06725	-	1349799..1350731 (-)	933	WP_096479144.1	GDP-L-fucose synthase family protein	-
COO52_RS06730	gmd	1350724..1351869 (-)	1146	WP_096479310.1	GDP-mannose 4,6-dehydratase	-
COO52_RS06735	-	1351883..1353295 (-)	1413	WP_096479145.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
COO52_RS06740	comB10	1353365..1354501 (-)	1137	WP_096479146.1	DNA type IV secretion system protein ComB10	Machinery gene
COO52_RS06745	comB9	1354494..1355459 (-)	966	WP_096479147.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
COO52_RS06750	comB8	1355459..1356202 (-)	744	WP_000660524.1	type IV secretion system protein	Machinery gene
COO52_RS06755	comB7	1356199..1356324 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
COO52_RS06760	comB6	1356340..1357395 (-)	1056	WP_096479148.1	P-type conjugative transfer protein TrbL	Machinery gene
COO52_RS06765	-	1357401..1358396 (-)	996	WP_096413487.1	PDZ domain-containing protein	-
COO52_RS06770	-	1358396..1358689 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
COO52_RS06775	panD	1358700..1359050 (-)	351	WP_096479149.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42005.63 Da
• Isoelectric Point: 9.9837

>NTDB_id=247195 COO52_RS06740 WP_096479146.1 1353365..1354501(-) (comB10) [Helicobacter pylori strain HPJP26]
MNKWIKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAKFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=247195 COO52_RS06740 WP_096479146.1 1353365..1354501(-) (comB10) [Helicobacter pylori strain HPJP26]
ATGAATAAGTGGATTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGATGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGAGCAGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAACTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCTCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTAAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	94.974	100	0.95