Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | AOY72_RS10095 | Genome accession | NZ_CP028756 |
| Coordinates | 2084942..2085952 (+) | Length | 336 a.a. |
| NCBI ID | WP_000568519.1 | Uniprot ID | Q32HA1 |
| Organism | Escherichia coli strain A19 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2079942..2090952
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY72_RS10065 (AOY72_10740) | nudB | 2081666..2082118 (+) | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| AOY72_RS10070 (AOY72_10745) | yebC | 2082147..2082887 (+) | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| AOY72_RS10075 (AOY72_10750) | ruvC | 2082922..2083443 (+) | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| AOY72_RS10080 (AOY72_10755) | yebB | 2083445..2084047 (-) | 603 | WP_001024917.1 | YebB family permuted papain-like enzyme | - |
| AOY72_RS10085 (AOY72_10760) | yobI | 2084118..2084183 (+) | 66 | WP_001386853.1 | stress response small protein YobI | - |
| AOY72_RS10090 (AOY72_10765) | ruvA | 2084322..2084933 (+) | 612 | WP_000580328.1 | Holliday junction branch migration protein RuvA | - |
| AOY72_RS10095 (AOY72_10770) | ruvB | 2084942..2085952 (+) | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| AOY72_RS10100 (AOY72_10775) | znuB | 2086099..2086884 (-) | 786 | WP_000571465.1 | zinc ABC transporter permease subunit ZnuB | - |
| AOY72_RS10105 (AOY72_10780) | znuC | 2086881..2087636 (-) | 756 | WP_000202996.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| AOY72_RS10110 (AOY72_10785) | znuA | 2087715..2088647 (+) | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| AOY72_RS10115 (AOY72_10790) | mepM | 2088663..2089985 (+) | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37173.77 Da Isoelectric Point: 4.7818
>NTDB_id=247199 AOY72_RS10095 WP_000568519.1 2084942..2085952(+) (ruvB) [Escherichia coli strain A19]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP
Nucleotide
Download Length: 1011 bp
>NTDB_id=247199 AOY72_RS10095 WP_000568519.1 2084942..2085952(+) (ruvB) [Escherichia coli strain A19]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTCGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGTTGTTTATTGATGAGATCCACCGTCTTTCGCCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGAGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
GTTATTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTTGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTGTTGATTTTCGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCGATGCTCACTAACCTTGAACCGCA
TGACGTGTTGTTTATTGATGAGATCCACCGTCTTTCGCCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAGCGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGAGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGTTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
GTTATTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTTGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
60.486 |
97.917 |
0.592 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae R6 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae D39 |
58.934 |
94.94 |
0.56 |
| ruvB | Synechocystis sp. PCC 6803 |
53.251 |
96.131 |
0.512 |
| ruvB | Helicobacter pylori 26695 |
52.038 |
94.94 |
0.494 |