Detailed information NTG0247199

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: COO52_RS06760
• Genome accession: NZ_CP023448
• Coordinates: 1356340..1357395 (-)
• Length: 351 a.a.
• NCBI ID: WP_096479148.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain HPJP26
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1351340..1362395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
COO52_RS06735	-	1351883..1353295 (-)	1413	WP_096479145.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
COO52_RS06740	comB10	1353365..1354501 (-)	1137	WP_096479146.1	DNA type IV secretion system protein ComB10	Machinery gene
COO52_RS06745	comB9	1354494..1355459 (-)	966	WP_096479147.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
COO52_RS06750	comB8	1355459..1356202 (-)	744	WP_000660524.1	type IV secretion system protein	Machinery gene
COO52_RS06755	comB7	1356199..1356324 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
COO52_RS06760	comB6	1356340..1357395 (-)	1056	WP_096479148.1	P-type conjugative transfer protein TrbL	Machinery gene
COO52_RS06765	-	1357401..1358396 (-)	996	WP_096413487.1	PDZ domain-containing protein	-
COO52_RS06770	-	1358396..1358689 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
COO52_RS06775	panD	1358700..1359050 (-)	351	WP_096479149.1	aspartate 1-decarboxylase	-
COO52_RS06780	-	1359040..1361262 (-)	2223	WP_096479150.1	ATP-dependent Clp protease ATP-binding subunit	-
COO52_RS06785	-	1361262..1361537 (-)	276	WP_096479311.1	ATP-dependent Clp protease adaptor ClpS	-
COO52_RS06790	-	1361551..1361963 (-)	413	Protein_1292	universal stress protein	-
COO52_RS06795	-	1362072..1362353 (+)	282	WP_244746302.1	hypothetical protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39847.83 Da
• Isoelectric Point: 8.8165

>NTDB_id=247199 COO52_RS06760 WP_096479148.1 1356340..1357395(-) (comB6) [Helicobacter pylori strain HPJP26]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYAISFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESAAKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=247199 COO52_RS06760 WP_096479148.1 1356340..1357395(-) (comB6) [Helicobacter pylori strain HPJP26]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGATTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCATTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTGGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGCTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCACATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGTGCCGCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAGTTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.296	100	0.963