Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   COO52_RS01915 Genome accession   NZ_CP023448
Coordinates   375133..375933 (+) Length   266 a.a.
NCBI ID   WP_096478615.1    Uniprot ID   -
Organism   Helicobacter pylori strain HPJP26     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 370133..380933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COO52_RS01880 pseH 370633..371175 (+) 543 WP_096478611.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  COO52_RS01885 - 371108..372046 (-) 939 WP_096478612.1 tetraacyldisaccharide 4'-kinase -
  COO52_RS01890 - 372043..372825 (-) 783 WP_096478613.1 NAD+ synthase -
  COO52_RS01900 ilvC 373074..374066 (+) 993 WP_096478614.1 ketol-acid reductoisomerase -
  COO52_RS01905 minD 374085..374891 (+) 807 WP_015643076.1 septum site-determining protein MinD -
  COO52_RS01910 minE 374888..375121 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  COO52_RS01915 dprA 375133..375933 (+) 801 WP_096478615.1 DNA-processing protein DprA Machinery gene
  COO52_RS01920 dprB 375930..376334 (+) 405 WP_096478616.1 Holliday junction resolvase RuvX Machinery gene
  COO52_RS01925 - 376466..377089 (+) 624 WP_096478617.1 tetratricopeptide repeat protein -
  COO52_RS01930 - 377217..377555 (+) 339 WP_096478618.1 hypothetical protein -
  COO52_RS01935 - 377539..378099 (+) 561 WP_096478619.1 hypothetical protein -
  COO52_RS01940 - 378110..378457 (+) 348 WP_096478620.1 glycoside hydrolase family protein -
  COO52_RS08110 - 378640..378801 (+) 162 WP_307896937.1 lysozyme -
  COO52_RS01960 - 379136..379517 (+) 382 Protein_372 DUF1294 domain-containing protein -
  COO52_RS01965 - 379517..380302 (+) 786 WP_096478621.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29772.68 Da        Isoelectric Point: 8.5925

>NTDB_id=247189 COO52_RS01915 WP_096478615.1 375133..375933(+) (dprA) [Helicobacter pylori strain HPJP26]
MKSNFQYSALENIPKAFDMLKDPPKKLYCVGDIKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVVVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEIKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHVVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=247189 COO52_RS01915 WP_096478615.1 375133..375933(+) (dprA) [Helicobacter pylori strain HPJP26]
ATGAAAAGCAACTTCCAATACAGTGCGCTAGAGAATATCCCTAAAGCCTTTGACATGCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATATAAAGCTTTTAGATGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTGTTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACCATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCCACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTGAGCGAATATGAAAAGGACTTTATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTAGTGATCGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGTAGCGCGAGATTAGCCCAAAAGTATCAAAAACCCTTATTTGTTTTGCCTCAGCGCCTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATCTTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATCAAAGACGAATTTTTGGAATATTGCGCCAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGACAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAACGCATCAATCATGTCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

95.489

100

0.955
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.115

84.962

0.417

Multiple sequence alignment