Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   COO52_RS01920 Genome accession   NZ_CP023448
Coordinates   375930..376334 (+) Length   134 a.a.
NCBI ID   WP_096478616.1    Uniprot ID   -
Organism   Helicobacter pylori strain HPJP26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 370930..381334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COO52_RS01885 - 371108..372046 (-) 939 WP_096478612.1 tetraacyldisaccharide 4'-kinase -
  COO52_RS01890 - 372043..372825 (-) 783 WP_096478613.1 NAD+ synthase -
  COO52_RS01900 ilvC 373074..374066 (+) 993 WP_096478614.1 ketol-acid reductoisomerase -
  COO52_RS01905 minD 374085..374891 (+) 807 WP_015643076.1 septum site-determining protein MinD -
  COO52_RS01910 minE 374888..375121 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  COO52_RS01915 dprA 375133..375933 (+) 801 WP_096478615.1 DNA-processing protein DprA Machinery gene
  COO52_RS01920 dprB 375930..376334 (+) 405 WP_096478616.1 Holliday junction resolvase RuvX Machinery gene
  COO52_RS01925 - 376466..377089 (+) 624 WP_096478617.1 tetratricopeptide repeat protein -
  COO52_RS01930 - 377217..377555 (+) 339 WP_096478618.1 hypothetical protein -
  COO52_RS01935 - 377539..378099 (+) 561 WP_096478619.1 hypothetical protein -
  COO52_RS01940 - 378110..378457 (+) 348 WP_096478620.1 glycoside hydrolase family protein -
  COO52_RS08110 - 378640..378801 (+) 162 WP_307896937.1 lysozyme -
  COO52_RS01960 - 379136..379517 (+) 382 Protein_372 DUF1294 domain-containing protein -
  COO52_RS01965 - 379517..380302 (+) 786 WP_096478621.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15253.84 Da        Isoelectric Point: 9.8304

>NTDB_id=247190 COO52_RS01920 WP_096478616.1 375930..376334(+) (dprB) [Helicobacter pylori strain HPJP26]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=247190 COO52_RS01920 WP_096478616.1 375930..376334(+) (dprB) [Helicobacter pylori strain HPJP26]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTGCGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACGTTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment