Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CCZ27_RS14275 Genome accession   NZ_CP023439
Coordinates   3271046..3272416 (-) Length   456 a.a.
NCBI ID   WP_096449213.1    Uniprot ID   -
Organism   Thauera sp. K11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3266046..3277416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ27_RS14250 (CCZ27_14250) - 3266265..3266894 (-) 630 WP_096449203.1 XrtA/PEP-CTERM system exopolysaccharide export protein -
  CCZ27_RS14255 (CCZ27_14255) - 3267117..3267893 (+) 777 WP_096449205.1 hypothetical protein -
  CCZ27_RS14260 (CCZ27_14260) - 3267939..3269261 (-) 1323 WP_096449207.1 DUF1302 family protein -
  CCZ27_RS14265 (CCZ27_14265) - 3269275..3270024 (-) 750 WP_096449209.1 ABC transporter ATP-binding protein -
  CCZ27_RS14270 (CCZ27_14270) - 3270069..3270878 (+) 810 WP_096449211.1 outer membrane lipoprotein-sorting protein -
  CCZ27_RS14275 (CCZ27_14275) pilR 3271046..3272416 (-) 1371 WP_096449213.1 sigma-54 dependent transcriptional regulator Regulator
  CCZ27_RS14280 (CCZ27_14280) - 3272413..3273990 (-) 1578 WP_232516423.1 ATP-binding protein -
  CCZ27_RS14285 (CCZ27_14285) - 3273965..3274213 (-) 249 WP_096449218.1 PP0621 family protein -
  CCZ27_RS14290 (CCZ27_14290) - 3274264..3275421 (-) 1158 WP_096449220.1 pyridoxal phosphate-dependent aminotransferase -
  CCZ27_RS14295 (CCZ27_14295) mtnA 3275622..3276716 (+) 1095 WP_096452598.1 S-methyl-5-thioribose-1-phosphate isomerase -
  CCZ27_RS14300 (CCZ27_14300) - 3276713..3277387 (+) 675 WP_096449222.1 class II aldolase/adducin family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49830.01 Da        Isoelectric Point: 5.5872

>NTDB_id=247165 CCZ27_RS14275 WP_096449213.1 3271046..3272416(-) (pilR) [Thauera sp. K11]
MSVIERRNRPDSIDVLVVDDEEDIRELLELSLLRMGLACDAAGGVAEARERLAQRRYRLCLTDMRLPDGDGLELVEYIQG
NLPGLPVAVITAYGSIETAIRALKLGAFDFVTKPVELKALRELVTHALKLEPRAAPLPPGRSLIGHSPAFEQLRAQIGKL
ARNQAPVFIRGESGTGKEVIARLIHGLGARAAGPFVPVNCGAISPDLMESELFGHRKGSFTGASSDKEGLFQAARGGTLF
LDEVGELPLGMQVKLLRAIQERAVRPVGAHAEEPVDVRILSASHQDLSRLVADGKFRQDLYFRINVITLRVPPLRERAED
IPELAEHILARVAEREGGAPRRLSPDALAALRGHAFPGNVRELENLLERACALCEGETIGAADIDLQPADGLAPPPPERE
APVAEGGEESGDVSDDERQRILRALDETRWNRSAAARNLGMTLRQLRYRLQKWGLE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=247165 CCZ27_RS14275 WP_096449213.1 3271046..3272416(-) (pilR) [Thauera sp. K11]
ATGAGCGTCATCGAGCGCCGCAACCGCCCCGACAGCATCGACGTCCTCGTCGTCGACGACGAGGAGGACATCCGCGAACT
GCTCGAACTCTCGCTGCTGCGCATGGGACTGGCCTGCGACGCCGCCGGCGGCGTGGCCGAGGCGCGCGAACGGCTCGCGC
AGCGGCGCTATCGCCTGTGCCTGACCGACATGCGCCTGCCCGACGGCGACGGCCTCGAACTCGTCGAATACATACAGGGC
AACCTGCCGGGCCTGCCGGTGGCGGTGATCACCGCCTACGGCAGCATCGAGACGGCGATCCGCGCGCTCAAGCTCGGCGC
GTTCGACTTCGTCACCAAGCCGGTCGAGCTGAAGGCGCTGCGCGAACTGGTGACGCACGCGCTGAAGCTCGAACCCAGGG
CCGCGCCGCTGCCGCCCGGCCGCAGCCTGATCGGCCATTCGCCGGCCTTCGAGCAGTTGCGCGCGCAGATCGGGAAGCTC
GCCCGCAACCAGGCGCCGGTCTTCATCCGCGGCGAATCCGGCACCGGCAAGGAGGTCATCGCGCGCCTGATCCACGGCCT
GGGGGCACGCGCCGCCGGACCCTTCGTGCCGGTCAATTGCGGCGCCATCTCGCCGGACCTGATGGAGAGCGAGTTGTTCG
GCCACCGCAAGGGCAGCTTCACCGGCGCCAGTTCCGACAAGGAGGGGCTGTTCCAGGCGGCGCGCGGCGGCACGCTGTTC
CTCGACGAGGTGGGCGAACTGCCGCTGGGCATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGCGGGCGGTGCGGCCCGT
CGGTGCGCATGCCGAGGAGCCGGTCGACGTGCGCATCCTGTCCGCCTCCCACCAGGACCTGTCGCGCCTGGTCGCCGACG
GCAAGTTCCGCCAGGATCTGTATTTCCGCATCAACGTCATCACGTTGCGCGTGCCGCCGCTGCGCGAGCGCGCCGAGGAC
ATCCCCGAACTGGCCGAGCACATCCTCGCCAGGGTGGCCGAACGCGAAGGCGGCGCGCCGCGGCGGTTGTCGCCCGATGC
GCTCGCCGCGCTGCGGGGCCATGCCTTTCCCGGCAACGTGCGCGAACTCGAGAACCTGCTCGAGCGCGCCTGCGCGCTGT
GCGAGGGAGAAACCATCGGTGCCGCGGACATCGACCTGCAGCCCGCCGACGGCCTTGCCCCGCCGCCGCCCGAACGGGAG
GCGCCCGTCGCCGAGGGCGGCGAGGAGAGCGGTGATGTCAGCGACGACGAGCGCCAGCGCATCCTGCGGGCGCTGGACGA
GACGCGCTGGAACCGCTCCGCCGCGGCGCGCAATCTCGGCATGACGCTGCGGCAACTGCGCTACCGGCTGCAGAAATGGG
GCCTGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-453)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Response regulator receiver domain (Response_reg)

(15-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.086

96.93

0.592
  pilR Acinetobacter baumannii strain A118

49.567

100

0.502
  luxO Vibrio cholerae strain A1552

36.404

100

0.364

Multiple sequence alignment