Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   CLI98_RS06810 Genome accession   NZ_CP023431
Coordinates   1347152..1347841 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SCGB 574     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342152..1352841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI98_RS06775 (CLI98_01334) - 1342350..1342832 (-) 483 WP_022553865.1 flagellar protein FlgN -
  CLI98_RS06780 (CLI98_01335) flgM 1342847..1343113 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CLI98_RS06785 (CLI98_01336) - 1343183..1343602 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  CLI98_RS06790 (CLI98_01337) comFC 1343676..1344365 (-) 690 WP_197538213.1 ComF family protein Machinery gene
  CLI98_RS06795 (CLI98_01338) - 1344371..1344655 (-) 285 WP_022553866.1 competence protein ComFB -
  CLI98_RS06800 (CLI98_01339) comFA 1344713..1346098 (-) 1386 WP_022553867.1 DEAD/DEAH box helicase Machinery gene
  CLI98_RS06805 (CLI98_01340) - 1346206..1347054 (-) 849 WP_003151387.1 DegV family protein -
  CLI98_RS06810 (CLI98_01341) degU 1347152..1347841 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CLI98_RS06815 (CLI98_01342) degS 1347918..1349081 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  CLI98_RS06820 (CLI98_01343) - 1349304..1349951 (+) 648 WP_007407485.1 YigZ family protein -
  CLI98_RS06825 (CLI98_01344) - 1349956..1351170 (+) 1215 WP_022553868.1 LCP family protein -
  CLI98_RS06830 (CLI98_01345) - 1351270..1352346 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=247065 CLI98_RS06810 WP_003219701.1 1347152..1347841(-) (degU) [Bacillus velezensis strain SCGB 574]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=247065 CLI98_RS06810 WP_003219701.1 1347152..1347841(-) (degU) [Bacillus velezensis strain SCGB 574]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment