Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CLI98_RS06790 Genome accession   NZ_CP023431
Coordinates   1343676..1344365 (-) Length   229 a.a.
NCBI ID   WP_197538213.1    Uniprot ID   -
Organism   Bacillus velezensis strain SCGB 574     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338676..1349365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI98_RS06755 (CLI98_01330) fliW 1338767..1339198 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  CLI98_RS06760 (CLI98_01331) - 1339228..1339797 (-) 570 WP_017418818.1 DUF6470 family protein -
  CLI98_RS06765 (CLI98_01332) flgL 1339888..1340805 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  CLI98_RS06770 (CLI98_01333) flgK 1340817..1342334 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  CLI98_RS06775 (CLI98_01334) - 1342350..1342832 (-) 483 WP_022553865.1 flagellar protein FlgN -
  CLI98_RS06780 (CLI98_01335) flgM 1342847..1343113 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CLI98_RS06785 (CLI98_01336) - 1343183..1343602 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  CLI98_RS06790 (CLI98_01337) comFC 1343676..1344365 (-) 690 WP_197538213.1 ComF family protein Machinery gene
  CLI98_RS06795 (CLI98_01338) - 1344371..1344655 (-) 285 WP_022553866.1 competence protein ComFB -
  CLI98_RS06800 (CLI98_01339) comFA 1344713..1346098 (-) 1386 WP_022553867.1 DEAD/DEAH box helicase Machinery gene
  CLI98_RS06805 (CLI98_01340) - 1346206..1347054 (-) 849 WP_003151387.1 DegV family protein -
  CLI98_RS06810 (CLI98_01341) degU 1347152..1347841 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CLI98_RS06815 (CLI98_01342) degS 1347918..1349081 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25217.87 Da        Isoelectric Point: 8.2927

>NTDB_id=247063 CLI98_RS06790 WP_197538213.1 1343676..1344365(-) (comFC) [Bacillus velezensis strain SCGB 574]
MNCLLCDSPISSSLTWRSLFSLAPGQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=247063 CLI98_RS06790 WP_197538213.1 1343676..1344365(-) (comFC) [Bacillus velezensis strain SCGB 574]
CTGAATTGTTTATTGTGTGATTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCGGGGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTA
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment