Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   CGZ65_RS04535 Genome accession   NZ_CP023429
Coordinates   901080..901670 (-) Length   196 a.a.
NCBI ID   WP_096294985.1    Uniprot ID   -
Organism   Neisseria weixii strain 10022     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 896080..906670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ65_RS04495 (CGZ65_04495) lolB 896923..897507 (+) 585 WP_096294982.1 lipoprotein insertase outer membrane protein LolB -
  CGZ65_RS04500 (CGZ65_04500) ispE 897517..898394 (+) 878 Protein_916 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  CGZ65_RS04520 (CGZ65_04520) - 898810..899799 (+) 990 WP_096296094.1 ribose-phosphate pyrophosphokinase -
  CGZ65_RS04525 (CGZ65_04525) - 899865..900437 (+) 573 WP_096294983.1 50S ribosomal protein L25/general stress protein Ctc -
  CGZ65_RS04530 (CGZ65_04530) - 900641..901078 (-) 438 WP_158608754.1 type IV pilin protein -
  CGZ65_RS04535 (CGZ65_04535) pilK 901080..901670 (-) 591 WP_096294985.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CGZ65_RS04540 (CGZ65_04540) - 901649..902563 (-) 915 WP_198345341.1 PilW family protein -
  CGZ65_RS04545 (CGZ65_04545) pilV 902566..903198 (-) 633 WP_378595442.1 type IV pilus modification protein PilV -
  CGZ65_RS04550 (CGZ65_04550) pilH 903201..903863 (-) 663 WP_096294986.1 GspH/FimT family pseudopilin Machinery gene
  CGZ65_RS04555 (CGZ65_04555) dnaB 904029..905435 (-) 1407 WP_096294987.1 replicative DNA helicase -
  CGZ65_RS04560 (CGZ65_04560) - 905605..906186 (+) 582 WP_096294988.1 superoxide dismutase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21661.53 Da        Isoelectric Point: 4.7353

>NTDB_id=247019 CGZ65_RS04535 WP_096294985.1 901080..901670(-) (pilK) [Neisseria weixii strain 10022]
MRKSRHLNNFAPQPSQHGYALFIVLMIMIVIALLVVTAVQSYNTEQRISTNEADRKLALSLAEAALQKGENKILEFDDKK
VTFKANCLGMIGDEETQGLCATPDAVVPTESSNAIEVESSTGNAWERMADKKLYIDENGQPVDDIQAENVSKTPVYIIEY
ISTNPSQGSTIYRVTAKAWGKNNNTVVMLQSYVANE

Nucleotide


Download         Length: 591 bp        

>NTDB_id=247019 CGZ65_RS04535 WP_096294985.1 901080..901670(-) (pilK) [Neisseria weixii strain 10022]
ATGCGAAAATCACGCCATTTAAATAATTTTGCACCCCAGCCTTCCCAGCATGGTTATGCTCTTTTCATCGTATTGATGAT
TATGATCGTTATTGCTCTTCTGGTAGTAACGGCTGTGCAATCATACAATACTGAACAACGAATCAGCACAAATGAGGCCG
ATAGAAAGTTAGCGCTTAGTTTAGCTGAAGCAGCTTTACAAAAAGGCGAAAATAAAATTTTAGAGTTTGATGATAAAAAA
GTTACTTTTAAAGCTAATTGTCTCGGTATGATTGGTGACGAAGAAACACAAGGGCTCTGTGCAACACCCGATGCTGTGGT
TCCAACAGAAAGCAGCAATGCGATAGAAGTAGAAAGCTCGACAGGCAATGCATGGGAACGCATGGCCGACAAAAAACTGT
ATATTGACGAAAACGGCCAACCCGTCGATGATATTCAAGCTGAAAATGTCAGCAAAACACCTGTGTATATCATAGAATAC
ATCAGCACTAATCCTTCTCAAGGCAGCACCATTTACCGTGTTACTGCCAAAGCATGGGGTAAAAACAATAATACTGTCGT
TATGCTTCAGTCTTACGTAGCGAATGAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(97-194)

PilX N-terminal (PilX_N)

(18-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

50

100

0.541

Multiple sequence alignment