Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CGZ65_RS04550 Genome accession   NZ_CP023429
Coordinates   903201..903863 (-) Length   220 a.a.
NCBI ID   WP_096294986.1    Uniprot ID   -
Organism   Neisseria weixii strain 10022     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 898201..908863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ65_RS04520 (CGZ65_04520) - 898810..899799 (+) 990 WP_096296094.1 ribose-phosphate pyrophosphokinase -
  CGZ65_RS04525 (CGZ65_04525) - 899865..900437 (+) 573 WP_096294983.1 50S ribosomal protein L25/general stress protein Ctc -
  CGZ65_RS04530 (CGZ65_04530) - 900641..901078 (-) 438 WP_158608754.1 type IV pilin protein -
  CGZ65_RS04535 (CGZ65_04535) pilK 901080..901670 (-) 591 WP_096294985.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  CGZ65_RS04540 (CGZ65_04540) - 901649..902563 (-) 915 WP_198345341.1 PilW family protein -
  CGZ65_RS04545 (CGZ65_04545) pilV 902566..903198 (-) 633 WP_378595442.1 type IV pilus modification protein PilV -
  CGZ65_RS04550 (CGZ65_04550) pilH 903201..903863 (-) 663 WP_096294986.1 GspH/FimT family pseudopilin Machinery gene
  CGZ65_RS04555 (CGZ65_04555) dnaB 904029..905435 (-) 1407 WP_096294987.1 replicative DNA helicase -
  CGZ65_RS04560 (CGZ65_04560) - 905605..906186 (+) 582 WP_096294988.1 superoxide dismutase -
  CGZ65_RS14885 - 906389..906814 (-) 426 WP_198345342.1 NF038104 family lipoprotein -
  CGZ65_RS04570 (CGZ65_04570) - 906814..907152 (-) 339 WP_096294989.1 general secretion pathway protein GspG -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24550.78 Da        Isoelectric Point: 9.5572

>NTDB_id=247020 CGZ65_RS04550 WP_096294986.1 903201..903863(-) (pilH) [Neisseria weixii strain 10022]
MHAKQKGFTLIELLVVIAIIAIMAVIALPNMSQWIASRRVASNAEQIANLLRFARSEAVRLNLPVYVCPVQIKKDGKSNG
SCNTSFGNQGLMAFADSDKNNQYERANDIQLRAIILNSKDNDRVNHNYYVYPFSGSKTTDSTARWTFLPNGNFVRWNNSP
SATDTFPTPSGYTQIILTDARAKSDDDKKNRSKVVFIDGSGRVEICAKSDSRDICQYSEK

Nucleotide


Download         Length: 663 bp        

>NTDB_id=247020 CGZ65_RS04550 WP_096294986.1 903201..903863(-) (pilH) [Neisseria weixii strain 10022]
ATGCACGCCAAACAAAAAGGTTTTACCCTTATCGAACTGCTGGTCGTGATTGCCATCATCGCAATCATGGCCGTCATCGC
CCTTCCCAATATGAGCCAATGGATCGCATCGCGCCGCGTAGCCAGCAATGCGGAACAAATCGCCAATCTACTGCGCTTCG
CCCGCAGCGAAGCCGTTCGCCTGAATCTTCCGGTTTATGTTTGTCCGGTTCAAATTAAAAAAGACGGCAAATCTAATGGT
AGCTGTAACACAAGTTTCGGCAATCAAGGTTTGATGGCTTTTGCCGATTCGGATAAAAACAACCAATATGAACGCGCCAA
CGATATTCAATTGCGTGCCATCATCTTAAACAGCAAAGACAACGATCGCGTAAACCATAACTATTATGTCTACCCTTTTA
GCGGCAGCAAAACGACCGATAGCACCGCGCGCTGGACTTTCCTACCTAACGGTAACTTTGTGCGTTGGAATAATTCACCT
TCTGCGACAGATACTTTTCCTACACCTAGTGGTTACACTCAAATTATCTTAACCGATGCCCGCGCAAAGAGTGACGATGA
TAAAAAAAACCGCTCCAAAGTAGTGTTTATCGACGGCAGCGGGCGTGTAGAAATCTGCGCCAAATCCGACTCGCGTGATA
TTTGCCAATATTCCGAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Type II transport protein GspH (GspH)

(44-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

53.704

98.182

0.527

Multiple sequence alignment