Detailed information NTG0246972

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: CNX70_RS25490
• Genome accession: NZ_CP023422
• Coordinates: 5716796..5717845 (-)
• Length: 349 a.a.
• NCBI ID: WP_096237840.1
• Uniprot ID: A0A290X1W0
• Organism: Janthinobacterium svalbardensis strain PAMC 27463
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5711796..5722845

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CNX70_RS25480 (CNX70_25485)	-	5712848..5715802 (-)	2955	WP_096237838.1	ribonucleoside-diphosphate reductase subunit alpha	-
CNX70_RS25485 (CNX70_25490)	ampD	5716185..5716796 (-)	612	WP_096237839.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
CNX70_RS25490 (CNX70_25495)	pilR	5716796..5717845 (-)	1050	WP_096237840.1	sigma-54 dependent transcriptional regulator	Regulator
CNX70_RS25495 (CNX70_25500)	-	5717963..5718223 (-)	261	WP_071075508.1	PP0621 family protein	-
CNX70_RS25500 (CNX70_25505)	ccsA	5718220..5719023 (-)	804	WP_096237841.1	cytochrome c biogenesis protein CcsA	-
CNX70_RS25510 (CNX70_25515)	-	5719353..5719892 (+)	540	WP_096237843.1	hypothetical protein	-
CNX70_RS25515 (CNX70_25520)	-	5719959..5720948 (-)	990	WP_096237844.1	ABC transporter substrate-binding protein	-
CNX70_RS25520 (CNX70_25525)	-	5721130..5722017 (-)	888	WP_096237845.1	LysR family transcriptional regulator	-
CNX70_RS29030	-	5722264..5722671 (+)	408	Protein_5067	MFS transporter	-

Sequence

Protein

• Length: 349 a.a.
• Molecular weight: 37465.84 Da
• Isoelectric Point: 9.7052

>NTDB_id=246972 CNX70_RS25490 WP_096237840.1 5716796..5717845(-) (pilR) [Janthinobacterium svalbardensis strain PAMC 27463]
MSRPSLSPHAVTAAGMPPAPQLSGNSLPMQALRAQIGRIARCGAPVAIRGESGTGKELAARAIHAQGARASFPFIAVNCG
AIPETLMEAEFFGCRQGAYTGALHERQGLFQAAHGGSLLLDEVDDLPLAMQVKLLRVLQERRVRKLGGSTDEAVDVRILC
ASQHGLARGVAAGTFRQDLFYRLNVIELALPPLRERRGDLQVLCEVILARLAPHQAVSLAPPVLAALAAYAFPGNVRELE
NMLERALAFADGGVIALDALALPSAAGGMPLRAPPALPERQLCLPGMAAYGVPPVLPLDMYLRQAERDMIMLALVQARYH
RARAARQLGLSVRQLRYRMQKLTIQEALP

Nucleotide

• Length: 1050 bp

>NTDB_id=246972 CNX70_RS25490 WP_096237840.1 5716796..5717845(-) (pilR) [Janthinobacterium svalbardensis strain PAMC 27463]
ATGTCCCGTCCCAGCCTCAGCCCGCATGCCGTGACCGCCGCCGGCATGCCACCGGCGCCTCAACTGAGCGGCAACTCCCT
GCCCATGCAGGCGCTGCGTGCGCAGATCGGCCGCATCGCCCGCTGTGGCGCGCCGGTGGCCATTCGCGGCGAATCGGGCA
CGGGCAAGGAATTGGCGGCGCGCGCCATCCATGCGCAGGGTGCGCGCGCCAGCTTCCCTTTTATTGCCGTCAACTGCGGC
GCGATTCCCGAAACGTTGATGGAGGCCGAATTCTTCGGCTGCCGCCAGGGCGCCTATACGGGCGCGCTGCATGAGCGCCA
GGGCTTGTTCCAGGCGGCCCATGGCGGCAGTTTGCTGCTCGATGAAGTCGACGATCTGCCGCTGGCCATGCAGGTCAAGC
TGTTGCGCGTACTGCAGGAGCGGCGCGTGCGCAAGCTGGGCGGTAGTACTGACGAGGCCGTCGACGTGCGCATCCTGTGC
GCCAGCCAGCATGGCCTGGCGCGCGGCGTGGCCGCCGGCACGTTTCGCCAGGATCTGTTTTACCGCCTGAATGTGATCGA
GCTGGCGCTGCCGCCGCTGCGCGAGCGGCGCGGCGATCTGCAGGTATTATGTGAGGTGATCCTGGCGCGTCTGGCGCCAC
ACCAGGCCGTGAGCCTGGCGCCGCCGGTGCTGGCGGCCCTGGCCGCGTATGCATTCCCCGGCAATGTGCGCGAACTGGAA
AATATGCTGGAGCGGGCGCTGGCCTTTGCCGATGGCGGCGTGATTGCGCTCGACGCGCTGGCCTTGCCGTCTGCGGCGGG
CGGCATGCCGCTGCGGGCGCCGCCGGCATTGCCGGAGCGGCAACTGTGCTTGCCCGGCATGGCGGCATATGGCGTGCCGC
CCGTCTTGCCGCTGGACATGTATTTACGCCAGGCCGAGCGCGACATGATCATGCTGGCGCTGGTGCAGGCGCGCTATCAC
CGCGCACGGGCGGCGCGCCAGCTGGGCCTGAGCGTGCGCCAGCTGCGTTACCGCATGCAGAAATTGACGATACAGGAAGC
GTTACCTTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (302-342)

• Sigma-54 interaction domain (Sigma54_activat) (23-188)

3D structure

• AlphaFold DB: A0A290X1W0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	52.41	95.129	0.499
pilR	Acinetobacter baumannii strain A118	41.742	95.415	0.398
luxO	Vibrio cholerae strain A1552	39.198	92.837	0.364